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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLDRNRQDIGYVLGRLFAVLEKIQAEANPGLNATIADRYFGSASSTPIAVFGTLMRLLPHHLNKLEFEGRAVQLQWEIRQ
ILEHCQRFPNHLNLEQQGLFAIGYYHETQFLFTKDALKNLFNEA

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g9t:K 582 124 1.0000 0.2131 1.0000 2.56e-86 8g9s:K, 8g9u:H, 8g9u:I, 8g9u:G, 8g9u:J, 8gam:H, 8gan:H, 8gan:G, 8gan:I, 8gan:J
2 8dfs:I 555 116 0.4355 0.0973 0.4655 5.00e-27 8dej:J, 8dej:K, 8dex:I, 8dfa:I, 8dfa:J, 8dfo:I
3 8dej:I 535 117 0.4435 0.1028 0.4701 4.32e-26
4 7kha:I 385 121 0.4355 0.1403 0.4463 2.98e-25
5 7m3k:A 587 112 0.2016 0.0426 0.2232 0.12
6 2ffl:A 732 69 0.1855 0.0314 0.3333 2.1 2ffl:B, 2ffl:C, 2ffl:D, 2qvw:A, 2qvw:B, 2qvw:C, 2qvw:D
7 6qv4:A 1666 46 0.1210 0.0090 0.3261 4.3 6qv3:A
8 8wwu:B 492 64 0.1774 0.0447 0.3438 5.9 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
9 8i9i:A 468 46 0.1452 0.0385 0.3913 6.8 8i9i:B
10 8bja:B 1638 13 0.0645 0.0049 0.6154 7.4
11 2ww2:B 737 37 0.1129 0.0190 0.3784 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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