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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLDKVMSLSSAVQDIKNGATLAVGGFGTGGMPHAIMQEIKKMGVRDLIIYSDGAGVDGYGIGVLFENKQINKMIVSYVGN
NKIFARQYLEGDVELEFCPQGSLAERMRAGGAGIPAFYTPTAVGTVLQTGGQITKYDKNGGVLKESTPRETRFFGGRLYC
LENAIKTDFSIVKAWKGDRCGNLVFRGTARNFNVPVGQCGQTVIAEVENLVENGDIDPDEVHLPGVYVDRVVVPERYQTL
IEHRTVTRSTRGEEVRQRIARRAALEFANGMYVNLGIGIPTESSNYIPAGVNVVLQSENGLIGMGPFPTEDKVDADWINA
GKQTISHLAGSALFDSATSFAMIRGGHMDLTMLGALEVAANGDLANFMIPGKLVKGPGGAMDLVSCGTRVVVTTTHCNKN
GDPKIVERCRLPVTGKHCVCRIITEYAVFDVVDGRLVLKEIAEDTTVDQVKKLTGVGFDADNVITMPLAP

The query sequence (length=470) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i3y:D 471 471 1.0000 0.9979 0.9979 0.0 8i3y:A, 8i3y:B, 8i3y:C, 8i40:A, 8i40:C, 8i40:D, 6lp1:A, 6lp1:B, 6lp1:C, 6lp1:D
2 1o9l:A 468 450 0.5234 0.5256 0.5467 6.10e-175 3k6m:C, 2nrb:A, 3oxo:E, 3oxo:F, 3oxo:G, 3oxo:H
3 1k6d:B 219 233 0.1702 0.3653 0.3433 7.64e-42
4 2ahv:A 512 497 0.2702 0.2480 0.2555 1.45e-15 2ahv:B, 2ahv:C, 2ahv:D, 2ahw:A, 2ahw:B, 2ahw:C
5 6co9:A 295 221 0.1021 0.1627 0.2172 1.29e-05 6coj:A
6 6ol9:A 416 47 0.0404 0.0457 0.4043 1.2
7 8fok:1 1046 144 0.0660 0.0296 0.2153 1.7 3flo:B, 3flo:D, 3flo:F, 3flo:H, 4fxd:A, 4fxd:B, 4fyd:A, 4fyd:B
8 5ceo:A 269 30 0.0255 0.0446 0.4000 5.7 5cep:A, 5ceq:A, 8deg:A, 8our:A, 8ous:A, 8out:A, 5vo1:A, 5vo2:A
9 2xpy:A 628 54 0.0362 0.0271 0.3148 5.7 2xpz:A, 2xq0:A
10 3r4s:A 424 53 0.0298 0.0330 0.2642 5.9 3r4s:B
11 8s03:A 100 36 0.0340 0.1600 0.4444 5.9
12 6c66:A 511 37 0.0298 0.0274 0.3784 8.3 5u07:C, 5u0a:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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