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BioLiP
>protein
GLDKFKKPEGSWDCEVCLVQNKADSTKCIACESAKP

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mo5:B 36 36 1.0000 1.0000 1.0000 6.07e-21
2 2ebr:A 47 25 0.6389 0.4894 0.9200 8.60e-12
3 7mo2:B 38 34 0.5833 0.5526 0.6176 4.62e-11 3ch5:B, 7mo2:D
4 7mo3:B 38 34 0.5556 0.5263 0.5882 1.93e-10 7mo3:D, 7mo4:B, 7mo4:D
5 2ebv:A 57 34 0.5556 0.3509 0.5882 6.71e-10
6 7mnt:B 38 29 0.5278 0.5000 0.6552 2.33e-09 7mnt:D, 7mnu:B
7 7mns:B 38 31 0.4722 0.4474 0.5484 7.48e-09
8 2ebq:A 47 27 0.4722 0.3617 0.6296 1.17e-08 2gqe:A, 2k0c:A
9 7mnv:B 38 36 0.4722 0.4474 0.4722 8.11e-08
10 7mnr:B 40 31 0.4722 0.4250 0.5484 8.32e-08
11 7mnp:B 39 29 0.4167 0.3846 0.5172 6.59e-07 7mnp:D, 7mnq:B
12 7mo1:B 34 25 0.4167 0.4412 0.6000 7.33e-06
13 2d9g:A 53 27 0.3611 0.2453 0.4815 2.04e-04
14 8pp6:K 36 26 0.3333 0.3333 0.4615 0.005
15 4q6f:A 56 14 0.2500 0.1607 0.6429 1.6 6fap:A, 6fap:B, 6fap:C, 6fap:D, 6fhu:A, 6fhu:B, 6fhu:D, 6fhu:C, 6fi0:A, 6fi0:B, 6fi0:C, 6fi0:D, 6fkp:A, 6fkp:D, 6fkp:C, 6fkp:B, 4q6f:B, 4q6f:C, 4q6f:D, 4qf2:A, 4qf2:B, 4qf2:C, 4qf2:D, 5t8r:D, 5t8r:A, 5t8r:B, 5t8r:C
16 2w8q:A 485 20 0.2500 0.0186 0.4500 1.8 2w8r:A
17 6i52:C 178 17 0.1944 0.0393 0.4118 2.3
18 5b79:A 118 11 0.2222 0.0678 0.7273 2.4 5vdc:A
19 7pds:A 457 16 0.2222 0.0175 0.5000 5.3 7pds:B, 7pds:C, 7pds:D, 7pds:E, 7pds:F
20 5y2f:A 297 36 0.3611 0.0438 0.3611 5.4 8ak5:A, 8ak5:B, 8ak6:A, 8ak6:B, 8ak7:A, 8ak7:B, 8ak8:A, 8ak8:B, 8ak9:A, 8ak9:B, 8aka:A, 8aka:B, 8akb:A, 8akb:B, 8akc:A, 8akc:B, 8akd:A, 8akd:B, 8ake:A, 8ake:B, 8akf:A, 8akf:B, 8akg:A, 8akg:B, 8bl0:A, 8bl0:B, 8bl1:A, 8bl1:B, 7cl0:A, 7cl1:A, 8cnm:A, 8cnm:B, 8cno:A, 8cno:B, 8f86:K, 8g57:K, 9g7h:A, 9g7h:B, 6hoy:A, 6hoy:B, 8i2b:A, 8i2b:B, 3k35:A, 3k35:B, 3k35:C, 3k35:D, 3k35:E, 3k35:F, 5mf6:A, 5mf6:B, 5mfp:A, 5mfp:B, 5mfz:A, 5mfz:B, 5mgn:A, 5mgn:B, 3pki:A, 3pki:B, 3pki:C, 3pki:D, 3pki:E, 3pki:F, 3pkj:A, 3pkj:B, 3pkj:C, 3pkj:D, 3pkj:E, 3pkj:F, 6qcd:A, 6qcd:B, 6qce:A, 6qce:B, 6qch:A, 6qch:B, 6qcj:A, 6qcj:B, 5x16:A, 6xuy:A, 6xuy:B, 6xv1:A, 6xv1:B, 6xv6:A, 6xv6:B, 6xv6:C, 6xv6:D, 6xv6:E, 6xv6:F, 6xvg:A, 6xvg:B, 6xvg:C, 6xvg:D, 6xvg:E, 6xvg:F, 3zg6:A, 6zu4:A, 6zu4:B
21 9b4h:A 1908 29 0.2222 0.0042 0.2759 6.1 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
22 9b4h:A 1908 36 0.2778 0.0052 0.2778 6.8 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
23 6tnt:A 1583 31 0.3056 0.0069 0.3548 6.1 5g05:A, 6tm5:A
24 4f43:A 320 26 0.1944 0.0219 0.2692 6.3 4dwp:A, 4e0g:A, 4e0j:A, 4e0p:A, 4e0y:A, 4e0z:A, 4e10:A, 4f41:A
25 2rhp:A 622 21 0.2500 0.0145 0.4286 6.3 1yo8:A
26 1l9m:B 681 34 0.3611 0.0191 0.3824 7.5 1l9m:A, 1l9n:A, 1l9n:B, 1nud:A, 1nud:B, 1nuf:A, 1nug:A, 1nug:B, 8oxv:A, 8oxw:A, 8oxx:A
27 8ge0:A 188 27 0.3056 0.0585 0.4074 8.5 8gdx:A, 8ge0:B, 8ge0:C
28 8wex:B 388 14 0.1944 0.0180 0.5000 8.7 8wex:A
29 6hcz:A 65 20 0.2222 0.1231 0.4000 9.5 6hcz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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