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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQ
TLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV
KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATKK
TANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT
GRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD

The query sequence (length=375) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5elx:A 391 384 0.9947 0.9540 0.9714 0.0 3peu:A, 3pev:A, 3pew:A, 3pey:A, 3rrm:A, 3rrn:A
2 6b4i:F 426 380 0.4960 0.4366 0.4895 8.17e-131 6b4i:E, 6b4j:E, 6b4j:F, 6b4k:A, 6b4k:B, 3ews:A, 3ews:B, 3fht:A, 3fht:B, 3fmo:B, 3fmp:B, 3fmp:D, 3g0h:A
3 3ex7:C 392 363 0.3760 0.3597 0.3884 7.67e-81 8c6j:7, 3ex7:H, 9fmd:7, 2hyi:C, 2hyi:I, 8i0w:u, 6icz:u, 2j0q:A, 2j0q:B, 2j0s:A, 2j0u:A, 6qdv:7, 2xb2:A, 2xb2:X, 5xjc:u, 5yzg:u, 7znj:A, 7znj:a, 7znj:F, 7znj:f, 7znj:K, 7znj:k
4 2vso:A 366 369 0.3493 0.3579 0.3550 2.87e-69 1fuk:A, 2vso:B, 2vsx:A, 2vsx:B
5 6xki:A 378 353 0.3733 0.3704 0.3966 1.84e-66 5zbz:A, 5zc9:A
6 4bru:A 375 374 0.3467 0.3467 0.3476 1.91e-62
7 4ct4:B 378 377 0.3200 0.3175 0.3183 7.82e-56 5anr:B, 4ct4:D, 1vec:A, 2wax:C, 2way:A
8 8i9v:Cb 642 366 0.3200 0.1869 0.3279 2.08e-50 8i9t:Cb, 8i9w:Cb, 8i9x:Cb
9 8enk:B 381 380 0.3013 0.2966 0.2974 3.28e-49 8enk:A, 1xtj:A, 7znk:P, 7znk:p
10 5sup:B 383 386 0.3013 0.2950 0.2927 5.81e-49 5sup:A, 5sup:C, 5suq:A, 5suq:C
11 7pmq:C 458 358 0.2987 0.2445 0.3128 2.70e-48 7pli:A, 7pli:B, 7pli:J, 7pli:E, 7pli:F, 7pli:I, 7pmm:A, 7pmm:B, 7pmq:D, 7pmq:A, 7pmq:B
12 6uv1:A 438 346 0.2907 0.2489 0.3150 8.93e-45 6uv1:B, 6uv2:A, 6uv3:A, 6uv4:A
13 6o5f:A 417 356 0.2987 0.2686 0.3146 1.24e-44 6o5f:B
14 8arp:C 445 362 0.2827 0.2382 0.2928 1.50e-43 8arp:A, 8arp:B, 8arp:D, 8arp:E, 8arp:F
15 7liu:A 442 375 0.3040 0.2579 0.3040 2.19e-43 6cz5:A, 5e7j:A, 5e7m:A, 2i4i:A, 7liu:B, 4px9:A, 4px9:B, 4px9:C, 4pxa:A, 8ssw:A, 8ssw:B
16 4kbf:A 365 323 0.2720 0.2795 0.3158 2.26e-43 2gxq:A, 2gxs:A, 2gxs:B, 2gxu:A, 3mwk:B, 3mwl:B, 3nbf:A, 3nbf:B, 3nbf:C, 3nbf:D
17 5dtu:A 404 377 0.2907 0.2698 0.2891 1.62e-41
18 8v87:3 656 388 0.3067 0.1753 0.2964 2.76e-41 8v84:3
19 2db3:A 420 344 0.2773 0.2476 0.3023 9.93e-40 2db3:B, 2db3:C, 2db3:D
20 8y6o:I 597 392 0.3067 0.1926 0.2934 4.53e-39 8qp8:G, 6qw6:5X, 6qx9:5X, 8r08:G
21 4ljy:A 451 363 0.2853 0.2373 0.2948 4.55e-38 7oqb:p, 7oqe:p
22 8fkv:NI 647 352 0.2827 0.1638 0.3011 8.88e-38 8fkt:NI, 8fku:NI, 8fkw:NI, 8fkx:NI, 8fky:NI
23 4d26:A 430 376 0.2773 0.2419 0.2766 1.94e-37 4d25:A
24 6l5n:A 377 350 0.2960 0.2944 0.3171 1.02e-36 6l5m:A, 6l5m:B, 6l5m:C, 6l5m:D, 6l5m:E, 6l5n:B, 6l5o:A
25 7nac:x 539 372 0.2987 0.2078 0.3011 1.72e-35 7nad:x, 7r72:x, 7r7a:x
26 4w7s:B 448 379 0.3013 0.2522 0.2982 1.49e-33
27 5gju:A 199 189 0.1787 0.3367 0.3545 1.41e-31
28 8tbx:A 458 405 0.2933 0.2402 0.2716 2.22e-31
29 2rb4:A 164 158 0.1627 0.3720 0.3861 2.52e-30
30 7oi6:x 374 378 0.2987 0.2995 0.2963 9.15e-30
31 8i9z:CE 465 348 0.2747 0.2215 0.2960 7.86e-29 8i9p:CE, 8i9r:CE, 8i9t:CE, 8i9v:CE, 8i9w:CE, 8i9x:CE, 8i9y:CE, 8ia0:CE
32 5z3g:Y 438 392 0.2827 0.2420 0.2704 1.32e-28 6c0f:p, 6cb1:p, 8e5t:p, 7nac:D, 7ohr:D, 7ohs:D, 7ohv:D, 7ohw:D, 7ohx:D, 7r6q:D, 7r7a:D, 8v87:D
33 8fky:SW 448 345 0.2747 0.2299 0.2986 7.23e-27 8fkp:SW, 8fkq:SW, 8fkr:SW, 8fks:SW, 8fkt:SW, 8fku:SW, 8fkv:SW, 8fkw:SW, 8fkx:SW, 3ly5:A
34 8esq:D 427 334 0.2587 0.2272 0.2904 6.16e-24 8esr:D, 8eth:D, 8eup:D, 8euy:D, 8ev3:D
35 3b7g:A 205 193 0.1627 0.2976 0.3161 1.21e-23 3b7g:B, 2oxc:A, 2oxc:B
36 3i5x:A 509 382 0.2640 0.1945 0.2592 5.73e-23 4db2:C, 4db2:A, 4db2:B, 4db2:D, 4db4:A, 3i5y:A, 3i61:A, 3i62:A, 3sqw:A, 3sqx:A, 4tyn:A, 4tyw:A, 4tyy:A, 4tz0:A, 4tz6:A
37 7am2:BW 447 393 0.2640 0.2215 0.2519 6.31e-23
38 8ia0:CW 540 367 0.2613 0.1815 0.2670 1.14e-22 8i9z:CW
39 6aic:A 202 194 0.1520 0.2822 0.2938 1.25e-21
40 6s8r:A 167 152 0.1280 0.2874 0.3158 5.57e-20
41 3ber:A 220 199 0.1680 0.2864 0.3166 1.85e-19
42 8eti:D 391 335 0.2400 0.2302 0.2687 2.13e-19
43 8v83:D 423 334 0.2400 0.2128 0.2695 7.60e-19 6elz:D, 8v84:D
44 3fe2:A 234 182 0.1467 0.2350 0.3022 2.46e-18 3fe2:B
45 3iuy:A 213 182 0.1600 0.2817 0.3297 2.81e-18 3iuy:B
46 3dkp:A 240 192 0.1520 0.2375 0.2969 7.44e-18
47 2pl3:A 232 196 0.1627 0.2629 0.3112 7.86e-18
48 5h1y:B 245 201 0.1493 0.2286 0.2786 1.59e-16 5h1y:A
49 6yxy:EB 663 124 0.1147 0.0649 0.3468 2.09e-11 7aoi:XB, 6yxx:EB
50 6yxy:EB 663 256 0.1627 0.0920 0.2383 1.95e-10 7aoi:XB, 6yxx:EB
51 1gm5:A 729 323 0.1973 0.1015 0.2291 6.29e-11
52 5v9x:A 772 152 0.1067 0.0518 0.2632 3.24e-05
53 6o8h:A 571 97 0.0880 0.0578 0.3402 6.21e-05 6o8g:B, 6o8g:C
54 6o8e:A 592 97 0.0880 0.0557 0.3402 1.01e-04 1d9z:A, 2fdc:B, 6o8e:B, 6o8f:A, 6o8f:B, 6o8g:A
55 2d7d:A 621 96 0.0853 0.0515 0.3333 6.40e-04 2nmv:A, 3v4r:B, 3v4r:A
56 7yym:A 1281 106 0.0880 0.0258 0.3113 0.003 4ngb:A, 4ngc:A, 4ngg:A, 4nh3:A, 4nh5:A, 4nh6:A, 7yyn:A, 7zpi:A, 7zpj:A, 7zpk:A
57 8w0a:C 636 89 0.0720 0.0425 0.3034 0.012 8w0a:A
58 9asj:A 741 89 0.0720 0.0364 0.3034 0.013 9asj:B, 9bp9:A, 9bp9:C, 9bpa:A, 9bpa:C, 9bpa:E, 9bpa:G
59 9bha:A 793 89 0.0720 0.0340 0.3034 0.013 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
60 1oyw:A 516 108 0.0667 0.0484 0.2315 0.034 1oyy:A
61 5zal:A 1314 179 0.1173 0.0335 0.2458 0.044 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A
62 2fdc:A 505 97 0.0853 0.0634 0.3299 0.047
63 7eld:A 1137 160 0.0907 0.0299 0.2125 0.059 7ele:A
64 7tjh:E 439 181 0.0987 0.0843 0.2044 0.096 7tji:E, 7tjj:E, 7tjk:E
65 5v8f:E 422 181 0.0987 0.0877 0.2044 0.12 6wgc:E, 6wgg:E, 6wgi:E
66 5zr1:E 460 181 0.0987 0.0804 0.2044 0.12 7mca:E, 6rqc:E, 7tjf:E
67 6xeo:A 1118 47 0.0400 0.0134 0.3191 0.23
68 6x2f:A 1144 47 0.0400 0.0131 0.3191 0.23 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
69 7w0b:A 1586 159 0.1040 0.0246 0.2453 0.34 7w0d:F
70 8hf0:A 1561 159 0.1040 0.0250 0.2453 0.40 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A
71 7aud:A 522 140 0.0853 0.0613 0.2286 0.43 7aud:E, 7aud:B, 7aud:C, 7aud:D, 7aud:F
72 7v6c:A 1540 150 0.0960 0.0234 0.2400 0.49
73 7auc:A 493 140 0.0853 0.0649 0.2286 0.56
74 7zpq:CA 1742 162 0.0987 0.0212 0.2284 0.81 7zrs:CA, 7zuw:CA
75 4cgz:A 629 140 0.0853 0.0509 0.2286 0.86 4cdg:A, 4cdg:B, 4o3m:A
76 7r7j:B 574 66 0.0587 0.0383 0.3333 1.4 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
77 2ix6:A 416 74 0.0587 0.0529 0.2973 1.8 2ix5:A, 2ix5:B, 2ix5:C, 2ix5:D, 2ix6:C, 2ix6:F, 2ix6:B, 2ix6:E, 2ix6:D
78 6qv4:A 1666 63 0.0507 0.0114 0.3016 2.1 6qv3:A
79 6qv4:A 1666 153 0.1040 0.0234 0.2549 2.2 6qv3:A
80 2v1u:A 382 162 0.0960 0.0942 0.2222 2.9
81 2jbh:B 213 54 0.0453 0.0798 0.3148 3.3 2jbh:A
82 1fr6:A 361 141 0.0987 0.1025 0.2624 3.3 1fr6:B, 8jb8:A, 8jb8:B, 1rgy:A
83 5hn4:A 329 75 0.0640 0.0729 0.3200 3.7 5hn6:A
84 3kx2:B 755 292 0.1760 0.0874 0.2260 4.8 5i8q:A, 5i8q:B, 5jpt:A, 5jpt:B, 3kx2:A, 2xau:A, 2xau:B, 5y88:W
85 1g71:A 344 39 0.0400 0.0436 0.3846 5.0 1g71:B
86 1z63:A 468 74 0.0560 0.0449 0.2838 7.9 1z63:B
87 7yq0:A 173 21 0.0320 0.0694 0.5714 8.6 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F
88 8w7m:3 619 82 0.0587 0.0355 0.2683 9.5 8b9a:3, 8b9b:3, 8b9c:3, 7pmk:3, 6skl:3, 8xgc:3
89 5frd:A 256 44 0.0400 0.0586 0.3409 9.9 5frd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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