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BioLiP
>protein
GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFALEE

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2cz8:D 68 67 0.9851 0.9706 0.9851 1.03e-40 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
2 2yiz:A 68 64 0.5075 0.5000 0.5312 2.67e-21 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
3 2vxa:A 66 65 0.5224 0.5303 0.5385 2.93e-18 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
4 6r1e:A 70 67 0.4776 0.4571 0.4776 3.74e-18 6r1e:C, 6r1e:D, 6r1e:B
5 2cc8:A 64 64 0.4030 0.4219 0.4219 7.99e-04 4b2h:A, 2ccb:A, 2cie:A, 2vkf:A, 2vx9:A
6 6zj3:Ly 106 60 0.1940 0.1226 0.2167 0.89
7 3noj:A 235 28 0.1343 0.0383 0.3214 3.7
8 6bn2:A 393 34 0.1940 0.0331 0.3824 4.8
9 1wl4:A 394 35 0.1940 0.0330 0.3714 4.9
10 8r4b:A 808 47 0.1940 0.0161 0.2766 5.5 8r4d:A
11 1ui0:A 192 29 0.1194 0.0417 0.2759 7.9 1ui1:A
12 2ocg:A 254 21 0.1642 0.0433 0.5238 8.5 2oci:A, 2ock:A, 2ocl:A
13 8fy8:R 286 37 0.1791 0.0420 0.3243 9.2 7e2x:R, 7e2y:R, 7e2z:R, 8fye:R, 8fyl:R, 8fyt:R, 8fyx:R, 8jsp:R, 8jt6:R, 8pjk:R, 8pkm:R, 8w8b:R
14 7cw5:B 394 23 0.1493 0.0254 0.4348 9.9 7cw5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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