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BioLiP
>protein
GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLE

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cz8:D 68 66 0.9848 0.9559 0.9848 3.41e-40 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
2 2yiz:A 68 63 0.5152 0.5000 0.5397 7.76e-21 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
3 6r1e:A 70 66 0.4697 0.4429 0.4697 1.19e-17 6r1e:C, 6r1e:D, 6r1e:B
4 2vxa:A 66 65 0.5152 0.5152 0.5231 4.66e-17 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
5 2cc8:A 64 64 0.3939 0.4062 0.4062 0.013 4b2h:A, 2ccb:A, 2cie:A, 2vkf:A, 2vx9:A
6 6bn2:A 393 34 0.2121 0.0356 0.4118 0.77
7 1wl4:A 394 35 0.1970 0.0330 0.3714 1.7
8 8w8j:A 572 28 0.1667 0.0192 0.3929 4.2 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
9 7cw5:B 394 23 0.1515 0.0254 0.4348 4.7 7cw5:A
10 6v11:E 464 48 0.2576 0.0366 0.3542 5.5
11 7fea:B 396 33 0.1970 0.0328 0.3939 7.1 7ei4:A, 7ei4:B, 7ei4:C, 7ei4:D, 7fea:A, 7fea:C, 7fea:D
12 6v11:C 503 50 0.2576 0.0338 0.3400 7.1 6v11:A, 6v11:B, 6v11:F
13 6on2:B 524 50 0.2576 0.0324 0.3400 7.8 6on2:C, 6on2:A, 6on2:D, 6on2:E, 6on2:F
14 2ocg:A 254 21 0.1667 0.0433 0.5238 8.2 2oci:A, 2ock:A, 2ocl:A
15 3fbs:B 295 60 0.2879 0.0644 0.3167 8.9 3fbs:A
16 8fy8:R 286 37 0.1818 0.0420 0.3243 8.9 7e2x:R, 7e2y:R, 7e2z:R, 8fye:R, 8fyl:R, 8fyt:R, 8fyx:R, 8jsp:R, 8jt6:R, 8pjk:R, 8pkm:R, 8w8b:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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