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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA
RPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL
IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN
SLPAYINLLTIVAIAIPVFYFAWMISTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPL
FIMLYTPFFAWLWTAQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTSMW
FLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI

The query sequence (length=448) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fmr:A 475 471 1.0000 0.9432 0.9512 0.0 4d2b:A, 4d2d:A, 5d58:A, 5d59:A, 6eia:A, 6fmy:A, 6ghj:A, 5oxl:A, 5oxm:A, 5oxn:A, 5oxo:A, 5oxq:A, 4xnj:A, 6yof:A, 6yog:A
2 5oxp:A 462 451 0.9888 0.9589 0.9823 0.0 7ac6:A, 4d2c:A, 5d6k:A, 5oxk:A, 4xni:A
3 4ikz:A 485 474 0.5112 0.4722 0.4831 1.60e-133
4 6gz9:A 488 478 0.4174 0.3832 0.3912 6.58e-108 6exs:A, 6hzp:A
5 7q0m:A 482 438 0.3549 0.3299 0.3630 1.68e-71
6 6gs4:A 468 404 0.2411 0.2308 0.2673 3.38e-37
7 4tpg:A 459 409 0.2321 0.2266 0.2543 3.01e-34 4lep:A, 4lep:B, 4tph:A, 4tpj:B, 4tpj:A
8 8b17:A 451 464 0.2746 0.2727 0.2651 3.85e-32 8b18:A, 8b19:A, 8b1a:A, 8b1b:A, 8b1c:A, 8b1d:A, 8b1e:A, 8b1f:A, 8b1g:A, 8b1h:A, 8b1i:A, 8b1j:A, 8b1k:A
9 4uvm:A 505 448 0.2634 0.2337 0.2634 3.50e-29
10 9bis:A 472 451 0.2589 0.2458 0.2572 3.26e-23 9bir:A, 9bit:A, 9biu:A
11 6ei3:A 511 449 0.2567 0.2250 0.2561 5.63e-23
12 7pmy:A 657 349 0.2165 0.1476 0.2779 6.05e-21
13 7pmx:A 657 386 0.2210 0.1507 0.2565 1.39e-18 7pmw:A
14 5a2o:A 470 188 0.1027 0.0979 0.2447 2.51e-06
15 8jzx:A 455 194 0.0938 0.0923 0.2165 0.003 8jzx:B
16 8jzx:A 455 116 0.0625 0.0615 0.2414 9.9 8jzx:B
17 8jzs:B 486 194 0.0938 0.0864 0.2165 0.003 8jzs:A, 8jzu:A, 8wx4:B, 8wx4:A
18 8qsk:A 523 208 0.0938 0.0803 0.2019 0.19 8qsk:C, 8qsl:A, 8qsl:C, 8wx5:A
19 8ttg:A 374 123 0.0625 0.0749 0.2276 0.91 8tte:A
20 7aaq:A 487 132 0.0804 0.0739 0.2727 1.2 7aar:A, 6h7d:A
21 1vbi:A 340 88 0.0603 0.0794 0.3068 2.8
22 3dwr:B 275 72 0.0469 0.0764 0.2917 4.3
23 8bpx:M 494 129 0.0804 0.0729 0.2791 5.0 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
24 6mpx:A 673 46 0.0379 0.0253 0.3696 7.1 1t61:C, 1t61:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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