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BioLiP
>protein
GKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMP

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mwm:A 74 69 0.9855 0.9189 0.9855 2.41e-46 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
2 2ky8:A 70 66 0.9130 0.9000 0.9545 3.55e-42
3 6ccg:A 72 67 0.7391 0.7083 0.7612 1.42e-34 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
4 1ig4:A 75 64 0.5362 0.4933 0.5781 2.50e-23 6d1t:A
5 6ogj:B 82 74 0.5217 0.4390 0.4865 1.04e-12 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
6 7fef:A 48 44 0.3333 0.4792 0.5227 1.45e-10
7 3vxv:A 65 43 0.3478 0.3692 0.5581 4.89e-09 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
8 2moe:A 71 59 0.3768 0.3662 0.4407 9.15e-09 4lg7:A
9 7fhj:B 107 50 0.2319 0.1495 0.3200 0.002 7mwh:B, 7mwl:B
10 7s7b:F 352 35 0.2319 0.0455 0.4571 0.45 7s7b:B, 7s7c:B
11 2lvh:A 45 24 0.1739 0.2667 0.5000 1.3
12 5ktc:A 187 29 0.1594 0.0588 0.3793 1.8 5ktd:A
13 3kfu:F 447 39 0.1884 0.0291 0.3333 3.2 3kfu:I
14 7d41:A 367 36 0.2029 0.0381 0.3889 4.1 7d41:B
15 7a4p:4 207 28 0.1159 0.0386 0.2857 4.4 6zzx:4, 6zzy:4
16 7jzw:A 427 52 0.2319 0.0375 0.3077 5.6 6b44:A, 6b45:A, 6b47:A, 6b48:A, 7ecv:A, 7ecw:A, 7elm:A, 7elm:K, 7eln:A, 7eln:X, 7eqg:B, 7jzx:A, 7jzy:A, 7jzz:A, 6ne0:A, 7t3j:A, 7t3k:A, 7t3k:a, 7t3l:A, 7t3l:a, 7taw:A, 7taw:a, 7tax:A, 5uz9:A, 6vqv:C, 6vqw:B, 6vqx:B, 7we6:A, 7we6:X, 6whi:A, 7yhs:A
17 3fpc:A 352 20 0.1304 0.0256 0.4500 7.0 3fpc:B, 3fpc:C, 3fpc:D
18 4coy:A 232 41 0.1884 0.0560 0.3171 7.0 4cou:A, 4cov:A, 4cow:A, 4coz:A
19 5a0y:F 248 24 0.1449 0.0403 0.4167 7.2 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
20 6d50:B 840 27 0.1594 0.0131 0.4074 8.3 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
21 4v61:BN 176 47 0.2174 0.0852 0.3191 8.4
22 3fsr:A 352 20 0.1304 0.0256 0.4500 8.6 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
23 7npa:A 618 25 0.1449 0.0162 0.4000 9.7 7npa:B, 7npa:C, 7npa:D, 7npa:E, 7npa:F, 7npa:G, 7npa:H, 7npa:I, 7npa:J, 7npa:K, 7npa:L, 7npa:M, 7npa:N, 7npa:O, 7npa:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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