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BioLiP
>protein
GKQQESSQYIHCENCGRDVSANRLAAHLQRCLSRGARR

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2lo2:A 38 38 1.0000 1.0000 1.0000 3.57e-22
2 3mhh:C 93 33 0.8684 0.3548 1.0000 6.56e-19 6aqr:C, 4fk5:C, 3kjl:E, 3kjl:H, 3m99:B, 3mhs:C, 6t9l:M, 4wa6:C, 4zux:W, 4zux:b, 4zux:g, 4zux:l
3 4wa6:G 71 25 0.6316 0.3380 0.9600 3.49e-11
4 2czr:A 226 22 0.2632 0.0442 0.4545 0.23
5 5vf0:B 43 29 0.2368 0.2093 0.3103 0.28 2mre:B, 2mrf:A
6 4wso:A 227 20 0.2368 0.0396 0.4500 3.8 4wso:B
7 4w4u:E 84 22 0.2105 0.0952 0.3636 4.1 4fjc:H, 4w4u:H, 4wa6:H
8 6ful:A 478 13 0.1579 0.0126 0.4615 4.3 5a1l:A, 5a1l:B, 3avr:A, 3avs:A, 6fuk:A, 5fxv:A, 5fxv:B, 5fxw:A, 5fxw:B, 5fxx:A, 5fxx:B, 5fxz:A, 5fxz:B, 5fy0:A, 5fy0:B, 5fy1:A, 5fy1:B, 5fy7:A, 5fy7:B, 5fym:A, 5fym:B, 6g8f:A, 4uf0:A, 4uf0:B, 3zli:A, 3zli:B, 3zpo:A, 3zpo:B
9 2lo3:A 44 22 0.2105 0.1818 0.3636 5.0
10 3mhh:E 92 22 0.2105 0.0870 0.3636 5.0 6aqr:E, 4fip:D, 4fip:H, 4fjc:D, 4fk5:E, 3m99:D, 3mhs:E, 6t9l:N, 4wa6:E, 4zux:Y, 4zux:d, 4zux:i, 4zux:n
11 2d9k:A 75 25 0.2632 0.1333 0.4000 5.3
12 5ywr:B 87 23 0.1842 0.0805 0.3043 7.6
13 7l3l:A 141 39 0.3158 0.0851 0.3077 8.7 7l3l:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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