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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAKEKGKFEDMAKADKARYEREMKRPPSAFFLFCSEYRPKI
KGEIGDVAKKLGEMWNNTDDKQPYEKKAAKLKEKYEK

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ze0:N 118 117 1.0000 0.9915 1.0000 1.00e-82 1ckt:A
2 6cij:N 133 131 0.9658 0.8496 0.8626 8.62e-71 5zdz:N, 5ze1:N, 5ze2:N
3 6cik:N 90 114 0.7094 0.9222 0.7281 2.62e-40 6cg0:N, 6cim:N
4 4qr9:A 75 66 0.5385 0.8400 0.9545 7.13e-38 4qr9:B
5 2gzk:A 159 62 0.4701 0.3459 0.8871 7.29e-23 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
6 1e7j:A 74 60 0.2137 0.3378 0.4167 2.37e-07 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
7 1j5n:A 93 62 0.2137 0.2688 0.4032 4.55e-07
8 1j5n:A 93 61 0.2222 0.2796 0.4262 2.40e-05
9 5jh0:D 157 62 0.1795 0.1338 0.3387 0.059 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
10 3ig5:A 672 66 0.1624 0.0283 0.2879 0.99 3ig8:A, 3lvv:A, 3lvw:A
11 1xes:A 387 78 0.2051 0.0620 0.3077 2.8 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
12 8br8:LN 130 51 0.1453 0.1308 0.3333 5.5 8brm:LN, 8bsi:LN, 8bsj:LN, 8btd:LN, 8btr:LN, 8fru:M, 7pwg:M, 7pwo:M2
13 5lsj:A 199 50 0.1026 0.0603 0.2400 6.0 5lsj:C
14 4l80:C 347 50 0.1282 0.0432 0.3000 7.4 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
15 6ah7:A 439 45 0.1026 0.0273 0.2667 8.2 6ah7:B, 6ah7:C, 6ah7:D, 6ah8:A, 6ah8:B, 6ah8:C, 6ah8:D, 7e5c:A, 7e5c:B, 7e5c:C, 7e5c:D
16 1x8k:A 344 27 0.0855 0.0291 0.3704 9.2 1fmj:A, 1fmj:B, 1fml:A, 1fml:B, 1x8j:A, 1x8j:B, 1x8k:B, 1x8l:A, 1x8l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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