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BioLiP
>protein
GKMFFVDLSRCTACRGCQIACKQWKNLPAEETRNTGSHQNPPDLSYVTLKTVRFTEKSRKGPGIDWLFFPEQCRHCVEPP
CKGQADVDLEGAVVKDETTGAVLFTELTAKVDGESVRSACPYDIPRIDPVTKRLSKCDMCNDRVQNGLLPACVKTCPTGT
MNFGDEQEMLALAEKRLAEVKKTYPGAVLGDPNDVRVVYLFTRDPKDFYEHAVA

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bqg:B 214 214 1.0000 1.0000 1.0000 4.67e-162 8bqh:B, 8bqi:B, 8bqj:B, 8bqk:B, 8bql:B, 8cm4:B, 8cm4:D, 8cm5:B, 8cm5:D, 8cm5:L, 8cm5:S, 8cm6:B, 8cm6:D, 8cm7:B, 8rc8:B, 8rc9:B, 8rca:B, 8rcb:B, 8rcc:B, 8rcg:B, 6sdr:B, 6sdv:B, 7z5o:BBB
2 1h0h:B 214 215 0.5841 0.5841 0.5814 1.25e-89 1h0h:L
3 1kqf:B 289 211 0.3551 0.2630 0.3602 1.31e-37 1kqg:B
4 2vpw:F 193 178 0.2570 0.2850 0.3090 1.81e-15 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
5 5ch7:B 329 236 0.2617 0.1702 0.2373 2.00e-12 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
6 2ivf:B 337 126 0.1682 0.1068 0.2857 6.22e-10
7 8c0z:C 158 187 0.2336 0.3165 0.2674 1.11e-09 8c0z:F
8 7qv7:B 183 179 0.2103 0.2459 0.2514 1.07e-06 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
9 6cz7:B 234 210 0.2103 0.1923 0.2143 4.06e-06 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
10 6btm:B 948 99 0.1308 0.0295 0.2828 1.41e-04
11 3egw:B 509 149 0.1869 0.0786 0.2685 3.28e-04 3ir5:B, 3ir6:B, 3ir7:B, 1q16:B, 1r27:B, 1r27:D, 1siw:B, 1y4z:B, 1y5i:B, 1y5l:B, 1y5n:B
12 7qv7:A 174 119 0.1776 0.2184 0.3193 0.001 7qv7:G
13 4v4c:B 274 164 0.1963 0.1533 0.2561 0.001 4v4c:D, 4v4c:F, 4v4c:H, 4v4c:J, 4v4c:L, 4v4c:N, 4v4c:P, 4v4c:R, 4v4c:T, 4v4c:V, 4v4c:X, 4v4d:B, 4v4d:D, 4v4d:F, 4v4d:H, 4v4d:J, 4v4d:L, 4v4d:N, 4v4d:P, 4v4d:R, 4v4d:T, 4v4d:V, 4v4d:X, 4v4e:B, 4v4e:D, 4v4e:F, 4v4e:H, 4v4e:J, 4v4e:L, 4v4e:N, 4v4e:P, 4v4e:R, 4v4e:T, 4v4e:V, 4v4e:X
14 6x6u:B 167 153 0.1869 0.2395 0.2614 0.002 6x1o:B, 6x1o:D, 6x6u:D
15 6f0k:B 961 200 0.1822 0.0406 0.1950 0.22
16 7b04:A 409 81 0.1028 0.0538 0.2716 0.37 7b04:D, 7b04:G, 7b04:J, 7b04:M, 7b04:P, 7b04:S, 7b04:V
17 7z0s:B 170 194 0.2056 0.2588 0.2268 0.41 7z0t:B
18 4z3w:F 170 60 0.0701 0.0882 0.2500 0.47 4z3w:E, 4z3w:G, 4z3w:H, 4z3x:E, 4z3x:F, 4z3x:G, 4z3x:H, 4z3y:E, 4z3y:F, 4z3y:G, 4z3y:H, 4z3z:E, 4z3z:F, 4z3z:G, 4z3z:H, 4z40:E, 4z40:F, 4z40:G, 4z40:H
19 8k9e:B 951 254 0.2664 0.0599 0.2244 1.2 8k9f:B, 8x2j:B
20 2oux:A 257 26 0.0561 0.0467 0.4615 2.2 2oux:B
21 6lod:B 929 23 0.0421 0.0097 0.3913 3.0 6loe:B
22 6cfw:N 121 43 0.0654 0.1157 0.3256 4.5
23 8g4c:B 248 43 0.0607 0.0524 0.3023 4.6 8g4c:C, 8g4d:B, 8g4d:C, 7tch:B, 7tch:C
24 7oe3:L 1478 22 0.0467 0.0068 0.4545 5.6 7oea:L, 7oeb:L
25 7ojl:L 1498 22 0.0467 0.0067 0.4545 5.6
26 7ojj:L 1785 22 0.0467 0.0056 0.4545 5.6
27 7ojk:L 1843 22 0.0467 0.0054 0.4545 5.6
28 7ojn:L 2010 22 0.0467 0.0050 0.4545 5.7 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
29 7m1q:A 1911 71 0.0935 0.0105 0.2817 6.2
30 8f5b:A 1924 71 0.0935 0.0104 0.2817 6.2 7lkz:A
31 7e7q:A 1958 71 0.0935 0.0102 0.2817 6.2
32 7e7o:A 2003 71 0.0935 0.0100 0.2817 6.2 7lkp:A
33 6sbq:A 891 40 0.0748 0.0180 0.4000 6.4 6ea1:A, 6ea2:A, 6eaa:A, 6eab:A, 3ebg:A, 3ebh:A, 3ebi:A, 6ee3:A, 6ee4:A, 6ee6:A, 6eed:A, 8ewz:A, 8ex3:A, 8eyd:A, 8eye:A, 8eyf:A, 8ez2:A, 4j3b:A, 4k5l:A, 4k5m:A, 4k5n:A, 4k5o:A, 4k5p:A, 3q43:A, 3q44:A, 4r5t:A, 4r5v:A, 4r5x:A, 6sbr:A, 8slo:A, 8svl:A, 8t6h:A, 8t7p:A, 3t8v:A, 8t83:A, 4x2u:A, 5xm7:A, 5y19:A, 5y1h:A, 5y1k:A, 5y1q:A, 5y1r:A, 5y1s:A, 5y1t:A, 5y1v:A, 5y1w:A, 5y1x:A, 5y3i:A, 4zqt:A, 4zw3:A, 4zw5:A, 4zw6:A, 4zw7:A, 4zw8:A, 4zx3:A, 4zx4:A, 4zx5:A, 4zx6:A
34 3lv8:A 204 55 0.0888 0.0931 0.3455 6.8
35 7y38:Y 466 48 0.0841 0.0386 0.3750 7.7 6jim:A, 6jim:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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