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BioLiP
>protein
GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA
SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVN
GDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHF

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fgl:D 233 227 1.0000 0.9742 1.0000 2.60e-174 5buc:A, 5buc:B, 2bzs:A, 2bzs:B, 4fgj:A, 4fgj:B, 4fgk:A, 4fgk:B, 4fgl:A, 4fgl:B, 4fgl:C, 3fw1:A, 3g5m:A, 3g5m:B, 3gam:A, 3gam:B, 4gqi:A, 4gqi:B, 4gr9:A, 4gr9:B, 5lbt:A, 5lbt:B, 5lbu:A, 5lbu:B, 5lbw:A, 5lbw:B, 5lby:A, 5lby:B, 5lbz:A, 5lbz:B, 3nfr:A, 3nfr:B, 3nhf:A, 3nhf:B, 3nhj:A, 3nhj:B, 3nhk:A, 3nhk:B, 3nhl:A, 3nhl:B, 3nhp:A, 3nhp:B, 3nhr:A, 3nhr:B, 3nhs:A, 3nhs:B, 3nhu:A, 3nhu:B, 3nhw:A, 3nhw:B, 3nhy:A, 3nhy:B, 3o2n:A, 3o2n:B, 7o4d:A, 7o4d:B, 3o73:A, 3o73:B, 3ovm:A, 3ovm:B, 3owh:A, 3owh:B, 3owx:A, 3owx:B, 3ox1:A, 3ox1:B, 3ox2:A, 3ox2:B, 3ox3:A, 3ox3:B, 2qmy:A, 2qmy:B, 2qmz:A, 2qmz:B, 4qod:A, 4qod:B, 4qoe:A, 4qoe:B, 4qof:A, 4qof:B, 4qog:A, 4qog:B, 4qoh:A, 4qoh:B, 4qoi:A, 4qoi:B, 4qoj:A, 4qoj:B, 1qr2:A, 1qr2:B, 2qr2:A, 2qr2:B, 2qwx:A, 2qwx:B, 2qx4:A, 2qx4:B, 2qx6:A, 2qx6:B, 2qx8:A, 2qx8:B, 2qx9:A, 2qx9:B, 1sg0:A, 1sg0:B, 3te7:A, 3te7:B, 3tem:A, 3tem:B, 3tzb:A, 3tzb:B, 3tzb:C, 3tzb:D, 4u7f:A, 4u7f:B, 4u7g:A, 4u7g:B, 4u7h:A, 4u7h:B, 3uxe:A, 3uxe:B, 3uxh:A, 3uxh:B, 4xdg:A, 4xdg:B, 4xdh:A, 4xdh:B, 1xi2:A, 1xi2:B, 4zvk:A, 4zvk:B, 4zvl:A, 4zvl:B, 4zvm:A, 4zvm:B, 4zvn:A, 4zvn:B, 1zx1:A, 1zx1:B
2 1dxq:A 273 219 0.4714 0.3919 0.4886 6.16e-74 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
3 5ea2:C 276 219 0.4714 0.3877 0.4886 1.69e-69 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
4 4gi5:B 261 226 0.4273 0.3716 0.4292 1.84e-57 4gi5:A
5 4f8y:A 196 152 0.2423 0.2806 0.3618 4.43e-18 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
6 5lva:A 174 157 0.2203 0.2874 0.3185 2.19e-16 5lva:B
7 3l9x:A 336 151 0.2203 0.1488 0.3311 4.63e-15 3l9x:B
8 3l9w:B 357 151 0.2203 0.1401 0.3311 6.14e-15 3eyw:A, 3eyw:B, 3l9w:A
9 4r81:A 199 122 0.1718 0.1960 0.3197 8.67e-15 4r81:B, 4r81:C, 4r81:D
10 3f2v:A 174 146 0.2115 0.2759 0.3288 2.76e-12
11 3rpe:A 196 145 0.1850 0.2143 0.2897 3.93e-07 3rpe:B
12 3r6w:A 211 83 0.1366 0.1469 0.3735 1.09e-05 3keg:A, 3keg:B, 3lt5:A, 3lt5:B, 4n65:A, 4n65:B, 4n9q:A, 4n9q:B, 3r6w:B, 2v9c:A, 2v9c:B
13 4c0w:A 200 57 0.1013 0.1150 0.4035 4.90e-05 4c0x:A, 4c14:A
14 2b3d:A 193 144 0.1806 0.2124 0.2847 6.90e-05 2b3d:B
15 7awv:A 210 62 0.0881 0.0952 0.3226 1.90e-04 7awv:B
16 3w78:A 210 83 0.1189 0.1286 0.3253 2.51e-04 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
17 4ese:A 193 125 0.1410 0.1658 0.2560 6.94e-04
18 7n2x:A 201 135 0.1498 0.1692 0.2519 0.002 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
19 3w77:A 207 137 0.1542 0.1691 0.2555 0.002 3w77:B
20 1t5b:A 199 124 0.1410 0.1608 0.2581 0.003 1t5b:B
21 2hpv:A 207 156 0.1762 0.1932 0.2564 0.008 2hpv:B, 2hpv:C, 2hpv:D
22 6qu0:A 211 57 0.1013 0.1090 0.4035 0.016 6qu0:B
23 6jxn:B 212 57 0.0881 0.0943 0.3509 0.017 6jxn:A, 6jxn:C, 6jxn:D, 6jxs:A, 6jxs:B, 6jxs:C, 6jxs:D
24 4m0c:A 212 89 0.1013 0.1085 0.2584 0.019 4m0c:B
25 6dxp:A 206 71 0.0881 0.0971 0.2817 0.021 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
26 5tvn:A 393 35 0.0573 0.0331 0.3714 1.4 6drx:A, 6dry:A, 6drz:A, 6ds0:A, 4ib4:A, 4nc3:A, 5tud:A, 5tud:D
27 4qvi:A 229 93 0.1189 0.1179 0.2903 1.7 7a5f:n, 7a5g:n, 7a5j:n, 5a9z:AC, 5aa0:AC, 2hw8:A, 5imq:Z, 5imr:Z, 7lh5:BC, 7lh5:DC, 6n1d:AL01, 6n1d:BL01, 5npm:A, 2om7:K, 5ot7:f, 6q95:A, 4qg3:A, 4reo:A, 4u1u:B5, 4u1v:B5, 4u20:B5, 4u24:B5, 4u25:B5, 4u26:B5, 4u27:B5, 3u4m:A, 3u56:A, 3umy:A, 5uq7:C, 5uq8:C, 4v4p:AC, 4v4x:BC, 4v4y:BC, 4v4z:BC, 4v51:BC, 4v51:DC, 4v5a:BC, 4v5a:DC, 4v5c:BC, 4v5c:DC, 4v5d:BC, 4v5d:DC, 4v5e:BC, 4v5e:DC, 4v5f:BC, 4v5f:DC, 4v5g:BC, 4v5g:DC, 4v5k:BC, 4v5k:DC, 4v5l:BC, 4v5m:BC, 4v5n:BC, 4v5p:BC, 4v5p:DC, 4v5q:BC, 4v5q:DC, 4v5r:BC, 4v5r:DC, 4v5s:BC, 4v5s:DC, 4v68:BC, 4v6a:BC, 4v6a:DC, 4v7l:BC, 4v7l:DC, 4v7m:BC, 4v7m:DC, 4v8j:BC, 4v8j:DC, 4v8o:BC, 4v8q:AC, 4v8u:BC, 4v8u:DC, 4v8y:By, 4v8y:CL, 4v90:BC, 4v97:BC, 4v97:DC, 4v9h:BC, 4v9j:BC, 4v9j:DC, 4v9k:BC, 4v9k:DC, 4v9l:BC, 4v9l:DC, 4v9m:BC, 4v9m:DC, 4w29:BC, 4w29:DC, 4wf1:B5, 4woi:B5, 1zho:A, 1zho:C, 1zho:E, 1zho:G, 5zlu:Y
28 3svl:B 182 67 0.0705 0.0879 0.2388 2.2 3svl:A
29 4dik:A 402 74 0.1013 0.0572 0.3108 2.5 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
30 3zm8:A 444 22 0.0573 0.0293 0.5909 2.7
31 4h6p:A 184 29 0.0485 0.0598 0.3793 3.5 4h6p:B, 4h6p:C, 4h6p:D, 4h6p:E, 4h6p:F, 4h6p:G, 4h6p:L, 4h6p:H, 4h6p:I, 4h6p:J, 4h6p:K, 4hs4:B, 4hs4:C, 4hs4:D, 4hs4:G, 4hs4:H, 3s2y:A, 3s2y:B, 3s2y:C, 3s2y:D
32 7m4u:e 155 79 0.0749 0.1097 0.2152 4.0 7m4w:e, 7m4x:e, 7m4y:e, 7m4z:e, 7ryf:e, 7ryg:e, 7ryh:e, 7uvv:e, 7uvw:e, 7uvx:e, 7uvy:e, 7uvz:e, 7uw1:e, 6v39:e, 6v3a:e, 6v3b:e, 6v3e:e, 6ypu:f, 6yt9:f
33 8twu:A 403 53 0.0661 0.0372 0.2830 4.0 8hny:A, 8hnz:A, 8ho0:A, 8ho1:A, 7s3j:A, 7s3j:B, 7s3t:A, 6vxv:A, 6vza:A, 6vzb:A, 6w0s:A, 6w0s:B, 6xai:A, 6xai:B, 6xaj:A, 6xak:A, 6xak:B, 6xal:A, 6xam:A
34 6yk9:A 341 44 0.0705 0.0469 0.3636 4.2 6yk9:B, 6yk9:C, 6yk9:E, 6yka:B, 6ykb:A, 6ykb:C
35 6jp4:A 770 80 0.0969 0.0286 0.2750 4.3 6jp4:B, 6jp4:C, 6jph:A, 6jpn:A
36 3klb:A 162 150 0.1410 0.1975 0.2133 4.7
37 1x77:A 174 30 0.0441 0.0575 0.3333 5.2 1x77:B
38 6vw7:D 514 21 0.0529 0.0233 0.5714 5.2 6vw7:B, 6vw8:B, 6vw8:D
39 8cd1:e 156 79 0.0705 0.1026 0.2025 5.9 6spc:e, 6spe:e, 6spf:e, 6spg:e, 7unr:e, 7unu:e, 7unv:e, 7unw:e
40 8xld:A 213 27 0.0441 0.0469 0.3704 7.6 8ill:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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