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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKKNTKGGKKGRRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSL
RDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFG

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fyx:i 121 121 1.0000 1.0000 1.0000 5.04e-87 8cah:i, 8cas:A, 6fyy:i, 6gsm:i, 6gsn:i, 3j80:i, 3j81:i, 3jam:i, 3jap:i, 8rw1:i, 8s8d:i, 8s8e:i, 8s8f:i, 8s8g:i, 8s8h:i, 8s8i:i, 8s8j:i, 4uer:0, 6zce:i, 6zu9:A
2 1d7q:A 143 116 0.6777 0.5734 0.7069 5.99e-57 7a09:G, 4kzy:n, 4kzz:n, 8oz0:G, 8p03:j, 8p09:j, 8pj1:q, 8pj2:q, 8pj3:q, 8pj4:q, 8pj5:q, 8pj6:q, 8ppl:Iq, 7qp6:q, 7qp7:q, 7syq:A, 7syr:A, 7sys:A, 7syv:A, 7syw:A, 7syx:A, 7tql:4, 6yal:j, 6yam:j, 6ybw:q, 6zmw:q, 6zp4:G
3 4bts:A0 99 96 0.4959 0.6061 0.6250 1.50e-41 4bts:B0, 4bts:C0, 4bts:D0
4 7ase:w 147 91 0.3554 0.2925 0.4725 8.77e-24
5 5jb3:6 95 81 0.2149 0.2737 0.3210 2.35e-09 5jbh:6, 6sw9:6, 6swc:6, 6swd:6, 7zag:6, 7zah:6, 7zai:6
6 6zxg:j 116 98 0.1818 0.1897 0.2245 7.05e-05 6zxf:j, 6zxh:j
7 4d7e:A 396 52 0.1570 0.0480 0.3654 0.042 4d7e:B
8 4d7e:C 377 44 0.1322 0.0424 0.3636 0.21
9 6jmv:A 256 23 0.0909 0.0430 0.4783 3.1 8bst:A, 8bst:B, 8bst:C, 8bst:D, 8bsu:A, 8bsu:D, 8bsu:B, 8bsu:C, 8bsu:E, 8bsu:H, 8bsu:F, 8bsu:G, 4e0w:A, 6f28:A, 6f28:B, 6f29:A, 4g8n:A, 4igr:A, 6jmv:B, 4mh5:A, 5nf6:B, 5nf6:A, 4nwc:A, 4nwd:A, 5o4f:B, 5o4f:A, 3s9e:A, 3s9e:B, 3u92:A, 3u92:B, 3u93:A, 3u93:B, 3u94:A, 3u94:B, 3u94:C, 3u94:D
10 8dr5:A 646 37 0.0826 0.0155 0.2703 3.2 8dqx:A, 8dqz:A, 8dr0:A, 8dr1:A, 8dr3:A, 8dr4:A, 8dr6:A, 8dr7:A, 1sxj:A, 7tfh:A, 7tfi:A, 7tfj:A, 7thj:A, 7thv:A, 7ti8:A, 7tib:A, 7tic:A, 7tid:A, 7tku:A, 7u19:A, 7u1a:A, 7u1p:A
11 7tfk:A 360 37 0.0826 0.0278 0.2703 3.3 7tfl:A
12 4ouj:A 281 33 0.1074 0.0463 0.3939 3.4 4ouj:B
13 5juy:B 1234 66 0.1488 0.0146 0.2727 5.3 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
14 4ayb:B 1103 46 0.1240 0.0136 0.3261 5.8 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
15 5ju6:A 835 40 0.0992 0.0144 0.3000 6.7 5ju6:B, 5ju6:C, 5ju6:D
16 4iv6:B 383 65 0.1405 0.0444 0.2615 7.3 4iv6:A
17 3pop:A 493 25 0.0826 0.0203 0.4000 7.3 3pop:B, 3pop:C, 3pop:D, 3pqb:A, 3pqb:B, 3pqb:C, 3pqb:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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