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BioLiP
>protein
GKISTDKYIFLTPRAYIIVHLLKVGKAKASEISENTQIPYQTVIQNIRWLLAEGYVVKEQKGEEIYYKLTDKGKQLATAE
LEKIRKLVEV

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5k1y:D 92 90 1.0000 0.9783 1.0000 1.42e-60 5k1y:C, 5k1y:A, 5k1y:B, 5k1y:E, 5k1y:F, 5k5o:A, 5k5o:B, 5k5o:C, 5k5o:D, 5k5q:C, 5k5q:D, 5k5q:A, 5k5q:B, 5k5q:E, 5k5q:F, 5k5r:C, 5k5r:D, 5k5r:A, 5k5r:B, 5k5r:E, 5k5r:F, 5kk1:C, 5kk1:D, 5kk1:A, 5kk1:B, 5kk1:E, 5kk1:F
2 6o8m:A 95 55 0.1778 0.1684 0.2909 0.22
3 3qph:A 335 71 0.2444 0.0657 0.3099 0.43 2f5t:X
4 5xyi:K 90 68 0.2222 0.2222 0.2941 1.0
5 8c3a:M 98 39 0.1556 0.1429 0.3590 1.3 8c3a:CX, 8cgn:n, 8cq7:M, 8cq7:CX, 8cqw:M, 8cqw:CX, 8cre:M, 8cre:CX, 8oeq:M, 8oeq:CX, 7pzy:L, 7q08:L, 7q0f:L, 7q0p:L, 7q0r:L, 8q5i:L
6 6h8l:B 206 42 0.1778 0.0777 0.3810 1.5 6h8l:A, 6h8n:A, 6h8n:B
7 7pub:Cr 267 50 0.1333 0.0449 0.2400 1.7 6hiv:Cr, 6hiw:Cr, 6hiy:Cr
8 1fok:A 568 95 0.3444 0.0546 0.3263 2.1
9 6o5c:A 215 60 0.2111 0.0884 0.3167 2.2 6o5c:B
10 3ku1:A 214 36 0.1111 0.0467 0.2778 2.3 3ku1:C, 3ku1:G, 3ku1:H
11 8azw:H 182 44 0.1333 0.0659 0.2727 2.9 8b2l:H3, 7qiw:T, 7qix:X, 7qiz:T
12 7bvs:A 290 43 0.1444 0.0448 0.3023 3.4 7exb:A
13 8a45:F 573 28 0.1222 0.0192 0.3929 4.1 8a29:A, 8a29:B, 8a29:C, 8a29:D, 8a29:E, 8a29:F, 8a45:A, 8a45:B, 8a45:C, 8a45:D, 8a45:E, 8a4d:A, 8a4d:B, 8a4d:C, 8a4d:D, 8a4d:E, 8a4d:F, 8a5k:A, 8a5k:B, 8a5k:C, 8a5k:D, 8a5k:E, 8a5k:F
14 7jux:A 278 48 0.1778 0.0576 0.3333 4.6 9axh:C, 9axh:D, 7juw:B, 7juy:B, 7juz:A, 7jv0:A, 7jv1:D
15 6llz:A 436 33 0.1333 0.0275 0.3636 5.8 7cyw:A, 6llw:A, 6llw:B, 6llz:B
16 7l19:C 129 62 0.2222 0.1550 0.3226 6.1 7l19:A, 7l19:B
17 4v3p:LT 189 40 0.1444 0.0688 0.3250 7.1 8ip8:LA, 8ipa:LA, 8ipb:LA, 8jiv:CR, 4v7e:CR
18 5hkj:A 402 66 0.1778 0.0398 0.2424 8.5 5hzf:A, 2jg8:B, 2jg8:C, 2jg8:D, 2jg8:E, 2jg9:B, 2jg9:E, 1pk6:B, 2wnu:F, 2wnv:B, 2wnv:C, 2wnv:D, 2wnv:E
19 5lmn:X 168 54 0.1889 0.1012 0.3148 9.0 5lmo:X, 5lmp:X, 5lmq:X, 5lmr:X, 5lms:X, 5lmt:X, 5lmu:X, 5lmv:X
20 3lec:A 225 36 0.1111 0.0444 0.2778 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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