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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKILLLGPERKWLRDFLESFEDEVTQYQDKLDKKSAILNNVDFIISYGYRYIIHPDIVERFKQRAINLHISYLPWNKGAD
PNLWSFLEDSPKGVTIHYIDSGLDTGEIIVQREVTYYENDTLRTTYERLTQTIEKLFMEYWPLIRLGKIRGIPQPKGGSY
HKLKDKEKYLYLLTDGWDTPVQKLIGKAQ

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6edk:A 193 189 1.0000 0.9793 1.0000 9.02e-139 6ci4:A, 6ci5:A
2 6mfz:A 1789 154 0.3810 0.0402 0.4675 7.64e-41 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
3 6mg0:B 1687 154 0.3810 0.0427 0.4675 8.88e-41
4 5vyq:A 235 140 0.2116 0.1702 0.2857 1.22e-13 4q12:A, 4q12:B, 5vyq:B
5 6v33:A 246 128 0.2063 0.1585 0.3047 4.35e-13 6v33:B
6 8gjh:A 639 142 0.2275 0.0673 0.3028 9.37e-13 8gjh:B, 8gjh:C, 8gjh:D, 8gjh:E, 8gjh:F
7 4qpd:A 308 164 0.2593 0.1591 0.2988 3.61e-12 4qpd:B, 4tt8:A, 4tts:A
8 2cfi:A 310 170 0.2646 0.1613 0.2941 5.82e-12 1s3i:A
9 6v2t:B 251 131 0.1905 0.1434 0.2748 1.27e-11 6v2t:A
10 4yfy:A 241 135 0.2169 0.1701 0.3037 5.35e-11 4yfy:B
11 1z7e:D 644 114 0.1852 0.0543 0.3070 1.86e-10 2bln:A, 2bln:B, 5j63:A, 5j63:B, 5j63:C, 5j63:D, 1z7e:A, 1z7e:B, 1z7e:C, 1z7e:E, 1z7e:F
12 4ew2:A 205 112 0.1534 0.1415 0.2589 3.16e-10 4ew3:A, 8fdx:A, 8fdy:A, 8fdz:A, 8fe0:A, 8fjv:A, 8fjw:A, 8fjx:A, 8fjy:A, 5j9f:A, 7jg0:A, 7jg3:A, 7jg4:A, 1men:A, 1men:B, 1men:C, 1njs:A, 1njs:B, 1rbm:A, 1rbm:B, 1rbq:A, 1rbq:B, 1rbq:C, 1rbq:D, 1rby:A, 1rby:B, 1rby:C, 1rby:D, 1rbz:A, 1rbz:B, 1rc0:A, 1rc0:B, 1rc1:A, 1rc1:B, 1zly:A, 4zyt:A, 4zyu:A, 4zyv:A, 4zyw:A, 4zyx:A, 4zyy:A, 4zyz:A, 4zz0:A, 4zz1:A, 4zz2:A, 4zz3:A
13 3da8:A 213 95 0.1640 0.1455 0.3263 4.41e-10 3da8:B, 3dcj:A, 3dcj:B
14 4xcz:A 397 165 0.2434 0.1159 0.2788 1.90e-09 4xd0:A, 4xd1:A
15 3r8x:A 309 95 0.1640 0.1003 0.3263 4.24e-09
16 5vyt:C 256 88 0.1534 0.1133 0.3295 4.58e-09 5vyr:A, 5vyr:B, 5vys:A, 5vys:B, 5vyt:A, 5vyt:B, 5vyt:D, 5vyu:A, 5vyu:B
17 2fmt:A 314 95 0.1640 0.0987 0.3263 5.11e-09 2fmt:B
18 5uin:A 399 63 0.1429 0.0677 0.4286 1.23e-08 5uij:A, 5uij:B, 5uik:A, 5uik:B, 5uil:A, 5uil:B, 5uim:A, 5uim:B, 5uin:B
19 4nv1:E 242 101 0.1587 0.1240 0.2970 1.27e-08 4nv1:C, 4nv1:D, 4nv1:F, 4nv1:B, 4nv1:A, 4nv1:G, 4nv1:H
20 6nbp:A 246 130 0.2011 0.1545 0.2923 1.89e-08
21 4lxq:B 274 111 0.2011 0.1387 0.3423 1.78e-07 4lxq:A, 4lxt:A, 4lxt:B, 4lxu:A, 4lxu:B, 4lxx:A, 4lxx:B, 4lxy:A, 4lxy:B, 4ly0:A, 4ly0:B, 4ly3:A, 4ly3:B
22 7n7b:B 271 71 0.1587 0.1107 0.4225 6.42e-07 7n7b:A, 7n7c:A, 7n7c:B
23 2ywr:A 216 91 0.1323 0.1157 0.2747 1.83e-05
24 7tnb:AAA 353 68 0.1111 0.0595 0.3088 0.31
25 7qen:A 465 112 0.1111 0.0452 0.1875 1.1
26 3fhq:A 601 140 0.1746 0.0549 0.2357 1.3 3fha:A, 3fha:B, 3fha:C, 3fha:D, 3fhq:B, 3fhq:D, 3fhq:F
27 2q3o:B 367 19 0.0529 0.0272 0.5263 4.1 2g5w:A, 2g5w:B, 2q3o:A, 1q45:A, 1q45:B
28 6v0t:A 402 22 0.0582 0.0274 0.5000 4.3 3mq3:A, 2pnq:A, 2pnq:B
29 7d4c:A 595 17 0.0529 0.0168 0.5882 6.9 7c3h:A, 7c3h:B, 7c3i:A, 7c3i:B, 7c3j:A, 7c3j:B, 7c3l:A, 7c3l:B, 7d4d:A, 7d4e:A, 3x0v:A, 3x0v:B
30 8b80:A 474 36 0.0741 0.0295 0.3889 7.3 8b81:A, 8b81:B, 5okb:B, 5okb:C, 5okb:D, 5oke:C, 5oke:D, 5oke:A, 5oke:B, 5okg:C, 5okg:D, 5okg:A, 5okg:B, 5okk:A, 5okk:B, 5okq:A, 5okq:B, 5okr:A, 5okr:B, 5oks:A, 5oks:B, 4zen:A, 4zen:B, 4zep:A, 4zep:B, 4zfm:D, 4zfm:A, 4zfm:B, 4zfm:C
31 4qu7:A 81 47 0.0794 0.1852 0.3191 8.2 4qu7:B, 4qu7:D
32 5k8e:A 473 57 0.1111 0.0444 0.3684 9.7 5l6f:A, 5l6g:A
33 6hul:A 241 74 0.1005 0.0788 0.2568 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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