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BioLiP
>protein
GKIEQILQKIEKILQKIEWILQKIEQILQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pn8:H 30 30 1.0000 1.0000 1.0000 7.45e-12 4pn8:J
2 4pnd:A 30 25 0.6333 0.6333 0.7600 0.002 4pnd:C
3 4pnd:A 30 24 0.6333 0.6333 0.7917 0.002 4pnd:C
4 5ez8:E 30 30 0.4333 0.4333 0.4333 0.028 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
5 8qab:A 30 24 0.4333 0.4333 0.5417 0.030 8qab:D
6 8b16:A 30 30 0.4333 0.4333 0.4333 0.077 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
7 6g6a:B 30 30 0.3333 0.3333 0.3333 0.11 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
8 6g6f:C 30 30 0.3333 0.3333 0.3333 0.12 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
9 5ez9:F 30 30 0.3667 0.3667 0.3667 0.19 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
10 6eiz:A 30 30 0.4000 0.4000 0.4000 0.50 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
11 7qwb:E 30 30 0.4333 0.4333 0.4333 0.67 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
12 4g1e:A 964 25 0.3667 0.0114 0.4400 1.6 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
13 6qd5:A 356 16 0.2667 0.0225 0.5000 3.3 8blp:A, 8blp:C, 8blp:B
14 4pnb:D 30 30 0.3333 0.3333 0.3333 4.1
15 7a1t:C 30 30 0.4333 0.4333 0.4333 4.4 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
16 8sre:A 1377 16 0.2667 0.0058 0.5000 4.7 8sr7:A, 8sr7:B, 8sr7:C, 8sr7:D, 8src:A, 8src:B, 8src:C, 8src:D, 8srd:A, 8srd:B, 8srd:C, 8srd:D, 8sre:B, 8sre:D, 8sre:C, 8srf:A, 8srf:B, 8srf:C, 8srf:D, 8srg:A, 8srg:B, 8srg:C, 8srg:D, 8srh:A, 8srh:B, 8srh:C, 8srh:D, 8sri:A, 8sri:B, 8sri:C, 8sri:D, 8srj:A, 8srj:B, 8srj:D, 8srj:C, 8srk:A, 8srk:B, 8srk:C, 8srk:D
17 8sr8:A 1353 16 0.2667 0.0059 0.5000 4.7 8sr8:B, 8sr8:C, 8sr8:D, 8sr9:A, 8sr9:B, 8sr9:C, 8sr9:D, 8sra:A, 8sra:B, 8sra:C, 8sra:D, 8srb:A, 8srb:B, 8srb:C, 8srb:D
18 8a9k:A 998 20 0.2000 0.0060 0.3000 7.5
19 7qwa:C 30 30 0.4333 0.4333 0.4333 8.7 7qwa:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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