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BioLiP
>protein
GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIG
LP

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cf7:B 82 82 1.0000 1.0000 1.0000 3.10e-58
2 4yo2:A 186 45 0.1951 0.0860 0.3556 0.024
3 1cf7:A 67 40 0.2317 0.2836 0.4750 0.11
4 4lb5:B 63 41 0.1463 0.1905 0.2927 0.48 4lb5:A, 4lb6:B
5 1ybu:A 166 39 0.1707 0.0843 0.3590 0.54 1ybu:D
6 1lqa:A 346 38 0.1463 0.0347 0.3158 1.3 1lqa:B
7 6zqg:JD 829 52 0.1951 0.0193 0.3077 2.1
8 6ik5:A 705 51 0.1951 0.0227 0.3137 2.3 6ik5:B, 6ik6:A, 6ik6:B, 6ik7:B, 6ik7:A, 6ik8:B, 6ik8:A, 3w5f:A, 3w5g:A, 3w5g:B
9 6h57:A 795 52 0.1951 0.0201 0.3077 3.7
10 2x4d:B 213 75 0.2561 0.0986 0.2800 4.1
11 7d63:RZ 839 52 0.1951 0.0191 0.3077 4.1 7d4i:RZ, 7d5t:RZ, 7mqj:A
12 6ya7:A 350 20 0.1098 0.0257 0.4500 4.9 6ya6:A, 6ya8:A
13 4aq4:A 418 50 0.1829 0.0359 0.3000 5.5 6x84:B
14 6zj3:SP 141 68 0.2927 0.1702 0.3529 5.9
15 1yol:A 256 47 0.1585 0.0508 0.2766 8.2 7ah3:B, 6ate:A, 5d10:A, 5d10:B, 5d11:A, 5d11:B, 5d12:B, 7d57:B, 7d5o:B, 3el7:A, 3en5:A, 3en6:B, 3en7:A, 4fic:A, 4fic:B, 8haq:A, 8haq:B, 6hve:B, 6hvf:A, 6hvf:B, 2hwo:A, 2hwo:B, 2hwp:A, 2hwp:B, 8jf3:A, 8jf3:B, 4lgg:A, 4lgg:B, 4lgh:A, 4lgh:B, 3lok:A, 3lok:B, 2qlq:A, 2qlq:B, 3qlf:A, 2qq7:A, 2qq7:B, 3uqf:B, 6wiw:A, 4ybj:B, 1yol:B
16 5iy6:B 1165 46 0.1220 0.0086 0.2174 9.6 8a40:B, 7b0y:B, 8b3d:B, 8b3f:B, 8bvw:B, 8byq:B, 8bz1:B, 7edx:p, 7eg7:p, 7eg8:p, 7eg9:p, 7ega:p, 7egb:p, 7egc:p, 7ena:PB, 7enc:PB, 6exv:B, 5flm:B, 8gxq:PB, 8gxs:PB, 5iy7:B, 5iy8:B, 5iy9:B, 5iya:B, 5iyb:B, 5iyc:B, 5iyd:B, 7lbm:B, 7nvr:B, 7nvs:B, 7nvt:B, 7nvu:B, 7nvy:B, 7nvz:B, 7nw0:B, 8oeu:B, 8oev:B, 8oew:B, 8of0:B, 5oik:B, 7okx:B, 7oky:B, 7ol0:B, 7oo3:B, 7oob:B, 7oop:B, 7opc:B, 7opd:B, 8p4f:B, 8s52:B, 8s54:B, 8s55:B, 8uha:B, 8uhd:B, 8uhg:B, 8ui0:B, 8uis:B, 8w8e:B, 8w8f:B, 8wak:p, 8wal:p, 8wan:p, 8wao:p, 8wap:p, 8waq:p, 8war:p, 8was:p, 8wat:p, 8wau:p, 8wav:p, 8waw:p, 8wax:p, 8way:p, 8waz:p, 8wb0:p, 7zwd:B, 7zx7:B, 7zx8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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