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BioLiP
>protein
GKESICLPFNFHSHRQHTCLDISPYGNEQVSRIACTSCLPTASDAMVAFINQTSNIMKNRNFYYGFCKSSELLKLSTNQP
PIFQIYYLLHAANHDIVPFMHAEDGRLHMHVIFENPDVHIPCDCITQMLTAAREDYSVTLNIVRDHVVISVLCHAVSASS
VKIDVTILQRKIDEMDIPNDVSESFERYKELIQELCQ

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5dob:A 237 202 1.0000 0.8312 0.9752 4.11e-146 5d5n:B, 5doc:A, 5doc:B, 5doe:B
2 7t7i:D 242 203 0.2437 0.1983 0.2365 6.56e-12 7t7i:B, 7t7i:H, 7t7i:J
3 7t7i:F 208 129 0.1726 0.1635 0.2636 1.95e-08
4 7pab:A 415 171 0.2132 0.1012 0.2456 1.85e-06 7pab:C
5 4z3u:B 252 141 0.1827 0.1429 0.2553 0.003 5e8c:A, 5fki:1A, 5fki:1C, 5fki:1E, 5fki:1G, 5fki:1I, 5fki:1K, 5fki:1M, 5fki:1O, 5fki:1Q, 5fki:1S, 5fki:1U, 5fki:1W, 5fki:1Y, 5fki:10, 5fki:12, 5fki:14, 5fki:16, 5fki:18, 5fki:2A, 5fki:2C, 5fki:2E, 5fki:2G, 5fki:2I, 5fki:2K, 5fki:2M, 5fki:2O, 5fki:2Q, 5fki:2S, 5fki:2U, 5fki:2W, 5fki:2Y, 5fki:20, 5fki:22, 5fki:24, 5fki:26, 5fki:28, 5fki:3A, 5fki:3C, 5fki:3E, 5fki:3G, 5fki:3I, 5fki:3K, 4z3u:D
6 1pyo:C 161 54 0.0711 0.0870 0.2593 0.54 1pyo:A, 3r5j:C, 3r5j:A, 3r6g:C, 3r6g:A, 3r6l:C, 3r6l:A, 3r7b:C, 3r7n:C, 3r7n:A, 3rjm:A, 3rjm:C
7 6evq:A 70 48 0.0660 0.1857 0.2708 2.7 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
8 4y0h:D 463 35 0.0609 0.0259 0.3429 6.7 6b6g:A, 6b6g:B, 6b6g:C, 6b6g:D, 1ohv:A, 1ohv:B, 1ohv:C, 1ohv:D, 1ohw:A, 1ohw:B, 1ohw:C, 1ohw:D, 1ohy:A, 1ohy:B, 1ohy:C, 1ohy:D, 4y0d:A, 4y0d:B, 4y0d:C, 4y0d:D, 4y0h:A, 4y0h:B, 4y0h:C, 4y0i:A, 4y0i:B, 4y0i:C, 4y0i:D, 4zsw:A, 4zsw:B, 4zsw:C, 4zsw:D, 4zsy:A, 4zsy:B, 4zsy:C, 4zsy:D
9 1uw3:A 106 61 0.0914 0.1698 0.2951 6.8
10 8cmk:A 913 61 0.0863 0.0186 0.2787 7.2 8cmk:B, 6gx9:A, 6gx9:B
11 6xyu:A 537 51 0.0863 0.0317 0.3333 7.3 6xys:A, 6xyy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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