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BioLiP
>protein
GKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVR
KVIRLPYNVAKDAEISGKYENGVLTIRIPIA

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vqm:A 111 111 1.0000 1.0000 1.0000 9.03e-76 3vqm:B, 3vqm:C, 3vqm:E, 3vqm:F, 3vqm:I, 3vqm:K, 3vqm:M, 3vqm:N
2 4yl9:D 123 109 0.6577 0.5935 0.6697 3.23e-48
3 5zs3:A 113 93 0.2613 0.2566 0.3118 2.34e-06 5zs6:A
4 3gla:B 99 93 0.2523 0.2828 0.3011 0.013 3gla:A
5 7oa6:B 152 31 0.1261 0.0921 0.4516 2.2 7oa6:I
6 3atg:A 242 43 0.1171 0.0537 0.3023 2.4
7 7smk:A 455 27 0.0901 0.0220 0.3704 2.5 7snv:A
8 8cmy:C 445 27 0.0901 0.0225 0.3704 4.2 8cmy:M, 8cmy:G, 8cmy:I, 8cmy:K, 8cmy:O, 7yyo:A, 7yyo:C, 7yyo:E, 7yyo:G, 7yyo:I, 7yyo:K, 7yyo:M, 7yyo:O
9 3aek:A 415 33 0.1171 0.0313 0.3939 7.7 3aek:C, 3aeq:A, 3aeq:C, 3aer:A, 3aer:C, 3aes:A, 3aes:C, 3aet:A, 3aet:C, 3aeu:A, 3aeu:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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