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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSELKETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGN
GFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPH
LAIHLQRNINENFGPNTEMHLVPILATAIQEELEKGTERHHSVLMSLLCAHLGLSPKDIVEMELCLADTQPAVLGGAYDE
FIFAPRLDNLHSCFCALQALIDSCAGPGSLATEPHVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEA
IPKSFMISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRNDTPCGTT
IGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLAENLY

The query sequence (length=457) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vat:A 458 456 0.9168 0.9148 0.9189 0.0 4dyo:A
2 7u5h:A 422 453 0.8512 0.9218 0.8587 0.0 7u5h:B, 7u5h:C, 7u5h:D, 7u5h:E, 7u5h:F, 7u5h:G, 7u5h:H, 7u5h:I, 7u5h:J, 7u5h:K, 7u5h:L, 3var:A
3 7dde:A 525 460 0.4792 0.4171 0.4761 4.33e-149 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
4 4njr:A 425 434 0.3939 0.4235 0.4147 3.49e-107 4njq:A, 4njq:B, 4njq:C, 4njq:D, 4njr:B, 4njr:C, 4njr:D, 4oiw:A, 4oiw:B, 4oiw:C, 4oiw:D, 4oiw:E, 4oiw:F, 3wt4:A, 3wt4:B, 3wt4:C, 3wt4:D
5 6pev:A 478 463 0.3567 0.3410 0.3521 5.51e-91 4eme:A, 4eme:B, 4eme:C, 4eme:D, 6pev:B, 6pev:C, 6pev:D, 6pev:E, 6pev:F, 6pev:G, 6pev:H, 6pev:I, 6pev:J, 6pev:K, 6pev:L
6 5jm6:A 445 450 0.3479 0.3573 0.3533 1.83e-82 5jm6:E, 5jm6:F, 5jm6:B, 5jm6:C, 5jm6:D
7 5jh9:B 477 463 0.3107 0.2977 0.3067 3.62e-68 5jgf:A, 5jgf:B, 5jgf:C, 5jgf:D, 5jh9:A, 5jh9:C, 5jh9:D
8 2glf:A 450 463 0.2473 0.2511 0.2441 9.70e-21 2glf:B, 2glf:C, 2glf:D
9 2glj:A 456 446 0.2210 0.2215 0.2265 6.29e-18 2glj:B, 2glj:C, 2glj:D, 2glj:E, 2glj:F, 2glj:G, 2glj:H, 2glj:I, 2glj:J, 2glj:K, 2glj:L, 2glj:M, 2glj:N, 2glj:O, 2glj:P, 2glj:Q, 2glj:R, 2glj:S, 2glj:T, 2glj:U, 2glj:V, 2glj:W, 2glj:X
10 2wzn:A 338 143 0.0832 0.1124 0.2657 0.011 4x8i:A, 4x8i:B, 4x8i:C
11 6lsv:A 338 70 0.0416 0.0562 0.2714 1.5 6lsv:B
12 5aye:A 335 53 0.0416 0.0567 0.3585 8.2 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
13 1s49:A 588 54 0.0350 0.0272 0.2963 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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