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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKAKKKGKSGAARNYMTRTQAVKKLQLSLPDFRKLCIWKGIYPREPRDRRKVNKSATASTTFYYTKDIQYLLHEPLLQKF
REQKALEKKISRALGRGDVSNAARLERNANLPEKTGKPRYTLNHIIRERYPTFQDALRDLDDCLSMLFLFANLPSTTAVP
AKMIARCERLCHEFQHYLIVTHSLRKSFLSIKGIYYQANIQGEDILWLVPYKFNQRIVGDVDFRIMGTFVEFYMTLLGFV
NYRLYTSIGLKYPPKFDQVKDDQGAELAAFSLEGLNDPSQLFANFTFFLSRETPRQPLEFILRAFGCKRIGWDAVLGEGA
FTTDESDPRITHQIIDRPGRYPGRIYVQPQWVWDSINDEELKPPELYAPGAQLPPHLSPFVK

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i9x:CJ 494 382 1.0000 0.7733 1.0000 0.0 8i9p:CJ, 8i9r:CJ, 8i9t:CJ, 8i9v:CJ, 8i9w:CJ, 8i9y:CJ, 8i9z:CJ, 8ia0:CJ, 8pv1:CJ, 8pv2:CJ, 8pv3:CJ, 8pv4:CJ, 8pv6:CJ, 8pv7:CJ, 8pvk:CJ, 8pvl:CJ
2 8esq:n 433 385 0.6178 0.5450 0.6130 1.00e-173 8esr:n, 8etg:n, 8eti:n, 8ev3:n
3 8eui:n 361 382 0.5759 0.6094 0.5759 1.50e-157 8eug:n
4 7nac:n 425 385 0.5419 0.4871 0.5377 6.99e-144 7btb:n, 6c0f:n, 6cb1:n, 6elz:n, 6em1:n, 6em3:n, 6em4:n, 6em5:n, 6ft6:n, 3jct:n, 6m62:n, 7ohq:n, 7ohr:n, 7ohs:n, 7ohv:n, 7ohw:n, 7r6q:n, 7r7a:n, 7u0h:n, 7uoo:n, 7uqb:n, 7uqz:n, 7v08:n, 8v83:n, 8v84:n, 8v87:n, 6ylx:n, 6yly:n, 5z3g:M
5 8fky:SM 500 408 0.5445 0.4160 0.5098 5.76e-135 8fkp:SM, 8fkq:SM, 8fkr:SM, 8fks:SM, 8fkt:SM, 8fku:SM, 8fkv:SM, 8fkw:SM, 8fkx:SM, 8fkz:SM, 8fl2:SM, 8fl3:SM, 8fl4:SM, 8fl6:SM, 8fl7:SM, 8fla:SM, 8flb:SM, 8fld:SM, 8fle:SM, 8ine:v, 8inf:v, 8ipx:q, 8ipy:q, 8ir3:q
6 7ohp:n 314 366 0.4764 0.5796 0.4973 2.30e-118
7 7ohx:n 243 329 0.3508 0.5514 0.4073 6.82e-70
8 7nad:n 103 67 0.1230 0.4563 0.7015 7.25e-28 7r72:n
9 9c0i:A 425 30 0.0340 0.0306 0.4333 2.3 9c0j:A
10 2be1:B 301 86 0.0628 0.0797 0.2791 8.6
11 5b43:A 1272 166 0.1099 0.0330 0.2530 9.5
12 8sfn:A 1302 166 0.1099 0.0323 0.2530 9.6 8sfh:A, 8sfl:A, 5xh6:A, 5xh7:A
13 5kk5:A 1201 166 0.1099 0.0350 0.2530 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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