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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKAFDDGVFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDFPSEYIMEVSGYTGKVSGYVV
VRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFKGSIGYWLDYFSMYLSL

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ak4:A 133 133 1.0000 1.0000 1.0000 5.27e-93 4ak4:C, 4ak4:E, 4ak4:G, 4ak4:I, 4ak4:K, 4ak4:M, 4ak4:O, 4akb:A, 4akb:C, 4akb:E, 4akb:G, 4akc:A, 4akc:C, 4akc:E, 4akc:G, 5bn6:E, 5bn6:F, 5bn6:H, 5bn6:G, 5j4t:A, 5j4t:C, 5j4t:E, 5j4t:G, 5j4x:A, 5j4x:C, 5j4x:E, 5j4x:G, 5j50:A, 5j50:C, 5j50:E, 5j50:G, 5j51:A, 5j51:C, 5j51:E, 5j51:G, 1jac:A, 1jac:C, 1jac:E, 1jac:G, 5jm1:A, 5jm1:C, 5jm1:E, 5jm1:G, 1ku8:A, 1ku8:C, 1ku8:E, 1ku8:G, 1kuj:A, 1kuj:C, 1kuj:E, 1kuj:G, 1m26:A, 1m26:C, 1m26:E, 1m26:G, 1pxd:A, 4r6n:A, 4r6n:C, 4r6n:E, 4r6n:G, 4r6o:A, 4r6o:C, 4r6o:E, 4r6o:G, 4r6p:A, 4r6p:C, 4r6p:E, 4r6p:G, 4r6q:A, 4r6q:C, 4r6q:E, 4r6q:G, 4r6r:A, 4r6r:C, 4r6r:E, 4r6r:G, 1toq:A, 1toq:C, 1toq:E, 1toq:G, 1tp8:A, 1tp8:C, 1tp8:E, 1tp8:G, 1ugw:A, 1ugw:C, 1ugw:E, 1ugw:G, 1ugx:A, 1ugy:A, 1ugy:C, 1ugy:E, 1ugy:G, 1uh0:A, 1uh0:C, 1uh0:E, 1uh0:G, 1uh1:A, 1uh1:C, 1uh1:E, 1uh1:G, 1ws4:A, 1ws4:C, 1ws4:E, 1ws4:G, 1ws5:A, 1ws5:C, 1ws5:E, 1ws5:G
2 1jot:A 133 133 0.8120 0.8120 0.8120 1.81e-76 3lly:A, 3llz:A, 3lm1:A, 3lm1:E, 3lm1:M, 3lm1:C, 3lm1:G, 3lm1:K, 3lm1:I, 3lm1:O
3 1xxr:B 154 137 0.6241 0.5390 0.6058 3.43e-50 1xxr:C, 1xxr:D
4 1j4u:A 149 135 0.5639 0.5034 0.5556 2.93e-40 1j4u:B, 1j4u:C, 1j4u:D, 1vbo:A, 1vbo:B, 1vbo:C, 1vbo:E, 1vbo:G, 1vbo:H, 1vbo:D, 1vbo:F, 1vbp:A, 1vbp:B
5 5m6o:A 150 138 0.5564 0.4933 0.5362 7.88e-40 5m6o:B, 5m6o:C, 5m6o:D, 5tqz:A, 5tqz:B, 5tqz:C, 5tqz:D
6 6fly:A 144 72 0.2556 0.2361 0.4722 1.72e-16 6fly:B, 6flz:A, 6flz:B
7 1zgs:A 442 78 0.2707 0.0814 0.4615 3.10e-16 4mq0:A, 1zgs:B
8 1zgs:A 442 77 0.2556 0.0769 0.4416 6.52e-15 4mq0:A, 1zgs:B
9 1zgs:A 442 79 0.2406 0.0724 0.4051 1.75e-13 4mq0:A, 1zgs:B
10 4pit:B 144 84 0.3008 0.2778 0.4762 4.65e-16 2bmz:A, 2bmz:B, 2bn0:A, 2bn0:B, 8hyf:A, 3mit:A, 3mit:B, 3miu:A, 3miu:B, 3miv:B, 4pik:B, 4pik:C, 4pik:D, 4pik:A, 4pit:A, 4pit:C, 4pit:D, 1x1v:A, 1x1v:B
11 4ddn:A 154 67 0.2481 0.2143 0.4925 2.14e-14 4ddn:B, 4ddn:C, 4ddn:D, 3r51:A, 3r52:A, 3r52:B, 3r52:C, 3r52:D
12 1c3m:A 145 63 0.2256 0.2069 0.4762 6.51e-10 1c3n:A
13 5xfi:A 152 92 0.2932 0.2566 0.4239 9.04e-10 5av7:A, 5av7:B, 5av7:C, 5av7:D, 5xfi:B
14 7v4s:A 143 102 0.2857 0.2657 0.3725 1.20e-07
15 6l4u:2 172 84 0.1729 0.1337 0.2738 0.55
16 3apa:A 138 128 0.2782 0.2681 0.2891 1.7 3vy6:A, 3vy7:A, 3vze:A, 3vzf:A, 3vzg:A
17 3nip:B 316 40 0.1128 0.0475 0.3750 2.1 3nip:C, 3nip:E, 3nip:D, 3nip:F, 3niq:A, 3niq:B
18 6ly5:H 170 85 0.1955 0.1529 0.3059 2.4
19 4ux5:A 113 57 0.0977 0.1150 0.2281 3.5 4ux5:B
20 5yrf:B 142 28 0.1053 0.0986 0.5000 5.8 5yrf:A, 5yrg:A, 5yrg:B, 5yri:B, 5yri:A, 5yrj:A, 5yrj:B, 5yrl:A, 5yrl:B, 5yrm:B
21 7nhk:n 114 34 0.0827 0.0965 0.3235 8.8 6o8w:m, 6o8x:m, 6o8y:m, 6o8z:m, 6o90:m, 7p7q:n, 7p7r:n, 7p7s:n, 7p7t:n, 7p7u:n, 6w6p:m, 6wua:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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