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BioLiP
>protein
GIWAVVPLKAPECAKTRLAGVLSHAARQALFFSMASHVIGTLRASPRIASLLVVTPSESTAEMARAAGAEILWGPPDEGM
ANACSRAMAHIAAAGGERVMFVPGDLPLLDEAAIDMLSRAPVDAIGMAPNRDGHGTNGLICRPGAIPLFFSGPSFSAHQN
AARRAGIDVWVVRSREWALDVDLPADLEEFESSVRDAKRRVLC

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7p97:AAA 203 203 1.0000 1.0000 1.0000 2.35e-146 7p97:BBB
2 6bwh:A 207 198 0.3103 0.3043 0.3182 7.12e-06 6bwh:B, 6bwh:C
3 4gsk:B 572 69 0.0985 0.0350 0.2899 0.87 4gsk:A
4 8r3g:A 335 57 0.1034 0.0627 0.3684 1.0 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C
5 5hmn:B 159 44 0.0788 0.1006 0.3636 1.1 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
6 3m2t:A 342 56 0.0887 0.0526 0.3214 1.8 3m2t:B
7 2igi:A 180 53 0.0640 0.0722 0.2453 2.0 2igi:B, 7vh4:C
8 5d4n:B 90 52 0.0887 0.2000 0.3462 3.2 5drk:C
9 5gke:A 239 56 0.0837 0.0711 0.3036 5.2 5gke:B, 5gkf:A, 5gkf:B, 5gkg:A, 5gkg:B, 5gkh:A, 5gkh:B, 5gki:A, 5gki:B
10 1ay0:A 678 73 0.1133 0.0339 0.3151 8.5 1ay0:B, 1gpu:A, 1gpu:B, 1ngs:A, 1ngs:B, 1tka:A, 1tka:B, 1tkb:A, 1tkb:B, 1tkc:A, 1tkc:B, 1trk:A, 1trk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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