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BioLiP
>protein
GIVELNRQLGRGVNLGNALEAPWEGAWGVRLEEGFFELIREAGFKTIRLPVSWTHHAGRAAPYTIDPAFFSRVDWAVTQA
TRRGLNIVVNVHHYDELNANPQAEEARYLSIWRQIAERYRNQPGSVYFELLNEPHGRFNDNPQLWNDLLAKALRVVRESN
PSRAVIVGPVGWNSLWRLSELRLPDDPNLIVTFHYYDPLEFTHQGAEWLNPVPPTGVVWHQQNAIAQAMEFAQRWAEQNR
RPIFVGEFGAYEKGDLDSRVRWTGAVRSELEKRNFSWAYWEFAAGFGIYDRTTRQWRTPLLKALVPEQPKL

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vt5:A 311 311 1.0000 1.0000 1.0000 0.0 7vt6:A, 7vt7:A
2 3amg:A 311 307 0.4630 0.4630 0.4691 8.91e-106 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
3 3amg:B 291 303 0.4534 0.4845 0.4653 1.33e-104
4 3nco:A 313 304 0.4341 0.4313 0.4441 3.16e-99 3nco:B, 3rjy:A
5 6ujf:A 301 304 0.3794 0.3920 0.3882 3.65e-80
6 4u5k:A 304 305 0.3633 0.3717 0.3705 1.36e-73 4u5i:A, 4u5i:B, 4u5k:B
7 4yzt:A 512 312 0.3151 0.1914 0.3141 1.27e-36
8 6wqp:B 354 348 0.3087 0.2712 0.2759 9.52e-30 6wqv:A, 6wqv:B, 6wqv:C, 6wqv:D
9 3ndz:A 345 330 0.2701 0.2435 0.2545 8.84e-28 3ndz:C, 3ndz:B, 3ndz:D
10 4w88:B 340 331 0.2765 0.2529 0.2598 1.68e-27 4w86:A, 4w86:B, 4w87:A, 4w87:B, 4w88:A, 4w89:A, 4w89:B
11 2jeq:A 359 303 0.2701 0.2340 0.2772 2.12e-26
12 1cen:A 334 340 0.2830 0.2635 0.2588 4.21e-26
13 5h4r:A 375 342 0.2926 0.2427 0.2661 1.88e-25
14 6gl0:A 331 331 0.2733 0.2568 0.2568 8.46e-25 6gl0:B, 6gl0:C
15 4v2x:A 534 267 0.2572 0.1498 0.2996 1.51e-24
16 4yhg:A 389 348 0.3055 0.2442 0.2730 6.66e-24
17 3zmr:A 469 337 0.2701 0.1791 0.2493 2.56e-21 3zmr:B
18 7ec9:A 323 307 0.2444 0.2353 0.2476 4.10e-21 7ec9:B
19 3ays:A 357 347 0.2765 0.2409 0.2478 1.73e-19
20 8ghy:A 362 346 0.2701 0.2320 0.2428 4.18e-18 8ghy:B
21 8oz1:A 373 285 0.2283 0.1903 0.2491 4.29e-15 6ha9:A, 6ha9:B, 6haa:A, 6haa:B, 5oyd:A, 5oyd:B, 5oye:A, 5oye:B
22 5d9n:A 349 346 0.2637 0.2350 0.2370 1.81e-13 5d9m:A, 5d9m:B, 5d9n:B, 5d9o:A, 5d9o:B, 5d9p:A, 5d9p:B
23 4w8b:A 386 228 0.2058 0.1658 0.2807 2.04e-13
24 6r2j:D 329 299 0.2251 0.2128 0.2341 3.04e-12 6r2j:A
25 5ljf:A 321 231 0.1704 0.1651 0.2294 1.07e-10 5ljf:B, 4m24:A, 7p6h:A, 7p6h:B, 7p6j:A, 7p6j:B, 7p6j:C, 7p6j:D, 6zz3:A, 6zz3:B, 6zz3:C, 6zz3:D
26 5d8z:A 324 177 0.1479 0.1420 0.2599 1.97e-10 5d8z:B
27 3pzt:B 296 236 0.1768 0.1858 0.2331 3.20e-09 3pzt:A
28 1e5j:A 302 247 0.1929 0.1987 0.2429 2.13e-08 2a3h:A, 3a3h:A, 4a3h:A, 5a3h:A, 6a3h:A, 8a3h:A, 1h11:A, 1h2j:A, 1h5v:A, 1hf6:A, 1ocq:A, 1qhz:A, 1qi0:A, 1qi2:A, 2v38:A, 1w3k:A, 1w3l:A
29 2cks:B 306 237 0.1801 0.1830 0.2363 6.39e-08 2ckr:B, 2ckr:A, 2cks:A
30 8bqb:A 331 177 0.1254 0.1178 0.2203 4.63e-06 8bqb:B, 8bqb:C
31 5j14:A 450 329 0.2412 0.1667 0.2280 2.66e-05 5j14:B, 5j7z:A
32 1ece:A 358 292 0.2090 0.1816 0.2226 4.06e-05 1ece:B
33 1g0c:A 358 300 0.2219 0.1927 0.2300 4.20e-05
34 5a8m:A 337 187 0.1640 0.1513 0.2727 4.48e-05 5a8m:B, 5a8m:C, 5a8n:A, 5a8o:A, 5a8p:A, 5a8q:A, 5a94:A, 5a94:B, 5a94:C, 5a94:D, 5a94:E, 5a94:F, 5a95:A, 5a95:B, 5a95:C
35 4hu0:A 330 199 0.1350 0.1273 0.2111 4.91e-05
36 4tuf:A 346 115 0.1029 0.0925 0.2783 2.57e-04 4tuf:B, 4tuf:C, 4tuf:D
37 5l9c:A 304 100 0.0643 0.0658 0.2000 0.005 5l9c:B, 5l9c:C, 5l9c:D
38 1tvp:B 291 132 0.0997 0.1065 0.2348 0.005
39 7r29:A 305 248 0.1511 0.1541 0.1895 0.010 7r29:B, 7r2c:A, 7r2c:B, 7r2d:A, 7r2d:B
40 1h4p:A 408 158 0.1222 0.0931 0.2405 0.014
41 5i78:A 305 199 0.1254 0.1279 0.1960 0.067 5i79:A, 5i79:B
42 2osx:A 449 66 0.0579 0.0401 0.2727 0.45 2osy:A, 2osy:B, 2oyk:A, 2oyk:B, 2oyl:A, 2oyl:B, 2oym:A, 2oym:B
43 3axx:B 379 126 0.0868 0.0712 0.2143 0.52 3axx:A, 3axx:C, 3qhm:A, 3qhm:B, 3qhm:C, 3qhn:A, 3qhn:B, 3qhn:C, 3qho:A, 3qho:B, 3qho:C, 3vvg:A, 3vvg:C, 2zum:A, 2zun:A, 2zun:B, 2zun:C
44 7osk:A 360 192 0.1350 0.1167 0.2188 1.00 7osk:B
45 5foo:A 463 66 0.0579 0.0389 0.2727 1.0 5foo:B, 5foo:C, 5foo:D, 5foo:E, 5foo:F
46 8xku:D 805 104 0.0804 0.0311 0.2404 1.4
47 3lpf:A 603 74 0.0611 0.0315 0.2568 1.5 5czk:A, 5czk:B, 4jhz:A, 4jhz:B, 3k4d:A, 3k4d:B, 6leg:A, 6leg:B, 6leg:C, 6leg:D, 6lej:A, 6lej:B, 6lel:A, 6lel:B, 6lem:A, 6lem:B, 3lpf:B, 3lpg:A, 3lpg:B, 8ohx:AAA, 8ohx:BBB, 7pr6:AAA, 7pr6:BBB
48 8a22:Be 228 32 0.0354 0.0482 0.3438 5.1 8apn:Be, 8apo:Be
49 7d6a:B 477 72 0.0579 0.0377 0.2500 8.6 7d6a:A, 7d6b:A, 7d6b:B
50 2az4:B 426 100 0.0836 0.0610 0.2600 8.8 2az4:A
51 7dkb:A 697 31 0.0386 0.0172 0.3871 9.0 7dkb:B, 7dkc:A, 7dkc:B, 7dkd:A, 7dkd:B, 7dke:A, 7dke:B, 8grt:A, 8grt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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