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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAG
ISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLF
PWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAE
TQAIAEALLEKYGQ

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d2y:A 257 254 1.0000 0.9883 1.0000 0.0 2bh7:A, 3d2z:A, 2wkx:A
2 4bol:A 243 245 0.4094 0.4280 0.4245 4.77e-57 4bol:B, 4bpa:B
3 4bxd:A 255 237 0.4252 0.4235 0.4557 9.82e-57 4bxd:B, 4bxe:A, 4bxe:B
4 1j3g:A 187 127 0.1969 0.2674 0.3937 4.84e-19 2y28:A, 2y28:B, 2y28:C, 2y2b:A, 2y2b:B, 2y2b:C, 2y2d:A, 2y2d:B, 2y2d:C, 2y2e:A, 2y2e:B, 2y2e:C
5 1lba:A 146 67 0.0906 0.1575 0.3433 0.58
6 4v8m:BZ 124 61 0.0709 0.1452 0.2951 1.9 8ova:BZ, 8ove:BZ
7 3hmb:B 156 80 0.1024 0.1667 0.3250 2.0 3hmb:A, 3hmb:C, 3rdr:A
8 6h7f:A 671 49 0.0709 0.0268 0.3673 3.9 6h7f:B, 6h7f:C, 6h7v:B, 6hcp:A, 6hcp:B, 6hcp:C
9 4krf:A 817 31 0.0433 0.0135 0.3548 4.0 4kre:A, 4kxt:A, 1si2:A, 1si3:A, 5w6v:A
10 6jfc:B 161 48 0.0709 0.1118 0.3750 4.2 6jfa:A, 6jfc:A, 6jfd:C, 6jfe:B, 6jff:B, 6jfn:B
11 5vm9:C 785 31 0.0472 0.0153 0.3871 8.0 5vm9:A
12 1t3q:A 162 43 0.0591 0.0926 0.3488 8.3 1t3q:D
13 1cnz:A 363 59 0.0709 0.0496 0.3051 8.8 1cnz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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