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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GISICVATDCDGEKVNLRFLFGPSVSRLLNYSTTAFNNYFRLKGISRAFAVNSAVVFNDVHCTWDRLERTTQLLHNSQVY
LFQPDTLDIPAAIPEPYEGEPLLS

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a1i:A 107 107 1.0000 0.9720 0.9720 2.13e-73 7a1i:C
2 6rqa:A 322 52 0.1442 0.0466 0.2885 1.1 6rqa:B
3 4wgj:A 210 40 0.1442 0.0714 0.3750 1.8
4 8jat:A 204 27 0.1154 0.0588 0.4444 3.9
5 1vp5:A 284 33 0.1250 0.0458 0.3939 4.5 1vp5:B
6 3asx:A 335 19 0.0865 0.0269 0.4737 5.4 1ezf:A, 1ezf:B, 1ezf:C, 3lee:A, 3lee:B, 3lee:C, 3lee:D, 3lee:E, 3q2z:A, 3q30:A, 3v66:A, 3vj9:A, 3vjc:A, 3vjc:B, 3vjc:C, 3vjc:D, 3vjc:E, 3vjc:F, 3wc9:A, 3wc9:B, 3wc9:C, 3wc9:D, 3wc9:E, 3wc9:F, 3wcd:A, 3wcd:B, 3wcd:D, 3wcd:E, 3wcf:A, 3wcf:B, 3wcf:C, 3wcf:D, 3wcf:E, 3wcf:F, 3wch:A, 3wch:B, 3wch:C, 3wch:D, 3wch:E, 3wch:F, 3wci:A, 3wci:B, 3wci:C, 3wci:D, 3wci:E, 3wci:F, 3wcj:A, 3wcj:B, 3wcj:C, 3wcj:D, 3wcj:E, 3wcj:F, 3wcl:A, 3wcm:A, 3wcm:B, 3wcm:C, 3wcm:D, 3wcm:E, 3wcm:F, 3wef:A, 3wef:B, 3wef:C, 3wef:D, 3wef:E, 3weg:A, 3weh:A, 3wei:A, 3wej:A, 3wek:A, 3wsa:A, 3wsa:B, 3wsa:C, 3wsa:E, 8wtq:A, 8wtr:A
7 8iq9:C 565 22 0.0769 0.0142 0.3636 5.4 8iq9:A, 8iq9:B
8 6ygd:B 720 49 0.1442 0.0208 0.3061 5.7
9 3pif:D 1023 44 0.1635 0.0166 0.3864 7.2
10 3pif:C 1066 44 0.1635 0.0159 0.3864 7.2 3pif:A, 3pif:B
11 4tr2:B 474 18 0.1058 0.0232 0.6111 7.2 8coy:A, 8coy:B, 8coz:A, 8coz:B, 8cp0:A, 8qke:A, 8qke:B, 8qkg:A, 8qkg:B, 8qkj:A, 8qkj:B, 4tr2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218