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BioLiP
>protein
GIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKT
LTVGDALKQGKIELSGDADLAAKLAEVI

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bdq:B 110 108 1.0000 0.9818 1.0000 1.56e-72 3bdq:A, 2qzt:A, 2qzt:B
2 8af2:A 123 110 0.2593 0.2276 0.2545 0.004 8af2:B, 8af3:A, 1ikt:A, 6z1w:A, 6z1x:A
3 2yhe:A 639 112 0.3148 0.0532 0.3036 0.61 4av7:A, 4av7:B, 4av7:C, 4av7:D, 4av7:E, 4av7:F, 4axh:A, 4axh:B, 2yhe:B, 2yhe:C, 2yhe:D, 2yhe:E, 2yhe:F
4 4v4p:AD 173 34 0.1019 0.0636 0.3235 1.8 4v4r:BD, 4v4s:BD, 4v4t:BD
5 1n83:A 251 29 0.1111 0.0478 0.4138 2.5 1s0x:A, 4s15:A, 4s15:B
6 2z00:A 426 39 0.1204 0.0305 0.3333 4.5
7 5myj:BD 272 54 0.1944 0.0772 0.3889 5.2
8 4v4n:AB 239 34 0.1019 0.0460 0.3235 6.0 4v6u:BB
9 8rke:B 279 84 0.2037 0.0789 0.2619 7.8
10 2uvf:A 571 43 0.1574 0.0298 0.3953 8.0
11 7npk:A 352 87 0.2315 0.0710 0.2874 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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