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BioLiP
>protein
GIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVY
NLAKIKGASVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKNKDHFSNIKAQKWEEV
ATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRFKVESKKDMREKRKIKSPNIADSVIM
SAILPIRK

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dkr:B 248 248 1.0000 1.0000 1.0000 0.0 8dkr:A
2 4iee:A 452 250 0.3145 0.1726 0.3120 8.71e-25 5c12:A, 5c15:A, 5c2d:A, 5c2f:A, 4iei:A, 4ife:A
3 3a6z:C 616 39 0.0645 0.0260 0.4103 6.0 3a6z:A, 3a70:A, 3a70:C, 2z8x:A, 2z8z:A, 2zj6:A, 2zj7:A, 2zvd:A, 2zvd:C
4 4v1z:A 440 54 0.0685 0.0386 0.3148 8.3 4v20:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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