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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GINPISRLAQIQQAKEPEYTLLTPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sdw:A 177 72 1.0000 0.3672 0.9028 6.84e-38 6htu:A, 6htu:B, 6htu:C, 6sdy:A
2 6sdw:A 177 39 0.2769 0.1017 0.4615 2.09e-04 6htu:A, 6htu:B, 6htu:C, 6sdy:A
3 1di2:A 69 62 0.3538 0.3333 0.3710 5.78e-07
4 7zpk:C 233 64 0.3846 0.1073 0.3906 2.58e-05 3adl:A, 5n8l:A, 5n8m:A
5 1di2:B 60 58 0.3077 0.3333 0.3448 1.10e-04
6 1yyk:A 221 62 0.2462 0.0724 0.2581 0.005 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
7 8dfv:K 253 65 0.3385 0.0870 0.3385 0.005 8dg5:K
8 8dfv:K 253 63 0.3385 0.0870 0.3492 2.9 8dg5:K
9 1ekz:A 76 33 0.2308 0.1974 0.4545 0.008
10 2l3j:A 236 33 0.2462 0.0678 0.4848 0.015 2l3c:A
11 2l3j:A 236 31 0.2462 0.0678 0.5161 0.030 2l3c:A
12 3vyy:A 86 39 0.2462 0.1860 0.4103 0.030 3vyy:B
13 6v5b:C 217 38 0.2154 0.0645 0.3684 0.071 6v5b:B, 6v5c:C, 6v5c:B
14 6v5b:C 217 21 0.1846 0.0553 0.5714 2.8 6v5b:B, 6v5c:C, 6v5c:B
15 9asp:B 250 38 0.2154 0.0560 0.3684 0.072 9asm:B, 9asn:B, 9asq:B
16 9asp:B 250 21 0.1846 0.0480 0.5714 2.9 9asm:B, 9asn:B, 9asq:B
17 5ztm:A 168 39 0.2308 0.0893 0.3846 0.39 5ztm:B
18 8e0f:B 454 25 0.2000 0.0286 0.5200 0.41 6d06:A, 6d06:D, 8e0f:A, 8e4x:A, 8e4x:B, 5ed1:A, 5ed1:D, 5ed2:A, 5ed2:D, 5hp2:A, 5hp2:D, 5hp3:A, 5hp3:D, 7kfn:A, 7kfn:D, 2l2k:B, 6vff:A, 6vff:B, 1zy7:A, 1zy7:B
19 5dv7:C 137 36 0.2000 0.0949 0.3611 0.78
20 9asp:C 92 21 0.1846 0.1304 0.5714 2.2
21 8dga:K 182 63 0.3385 0.1209 0.3492 3.0 8dg7:K
22 5t16:A 276 32 0.2154 0.0507 0.4375 3.0 2lbs:B, 2lup:B, 4oog:C, 5t16:B, 5t16:I, 5t16:J, 1t4l:B
23 5k1y:D 92 45 0.2000 0.1413 0.2889 3.1 5k1y:C, 5k1y:A, 5k1y:B, 5k1y:E, 5k1y:F, 5k5o:A, 5k5o:B, 5k5o:C, 5k5o:D, 5k5q:C, 5k5q:D, 5k5q:A, 5k5q:B, 5k5q:E, 5k5q:F, 5k5r:C, 5k5r:D, 5k5r:A, 5k5r:B, 5k5r:E, 5k5r:F, 5kk1:C, 5kk1:D, 5kk1:A, 5kk1:B, 5kk1:E, 5kk1:F
24 3chx:A 362 16 0.1538 0.0276 0.6250 3.2 3chx:E, 3chx:I
25 7v6c:B 260 47 0.2308 0.0577 0.3191 3.7
26 6vr7:A 485 51 0.2462 0.0330 0.3137 5.9
27 6fie:B 255 29 0.1538 0.0392 0.3448 6.0
28 4o4e:A 246 32 0.1538 0.0407 0.3125 7.4 4o4d:A, 4o4f:A, 8omi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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