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BioLiP
>protein
GINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKKQ

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3s2r:B 78 64 1.0000 0.8205 1.0000 1.58e-43 3s2q:A, 3s2q:B, 3s2r:A
2 3fnv:B 68 63 0.5625 0.5294 0.5714 1.32e-20 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
3 3ew0:A 77 63 0.4844 0.4026 0.4921 1.64e-17 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
4 7yvz:A 63 60 0.4375 0.4444 0.4667 4.36e-15
5 6avj:A 92 36 0.2188 0.1522 0.3889 0.61 6avj:B, 6avj:C
6 3tbo:A 54 18 0.1562 0.1852 0.5556 0.81
7 4ntc:A 325 47 0.2500 0.0492 0.3404 1.6 4ntc:B
8 4gmk:A 227 11 0.1406 0.0396 0.8182 1.7 4gmk:B
9 5frp:A 677 25 0.1562 0.0148 0.4000 3.4 5frp:B, 5frs:A
10 6m35:A 310 27 0.1562 0.0323 0.3704 5.2 6m35:B, 6m35:C, 6m35:D, 6m35:E, 6m35:F, 6m35:G, 6m35:H, 6m3x:A, 6m3x:B, 6m3x:C, 6m3x:D, 6m3x:E, 6m3x:F, 6m3x:G, 6m3x:H, 6m3x:I, 6m3x:J, 6m3x:K, 6m3x:L, 6m3x:M, 6m3x:N, 6m3x:O, 6m3x:P, 6m3x:Q, 6m3x:R, 6m3x:S, 6m3x:T, 6m3x:U, 6m3x:V, 6m3x:W, 6m3x:X
11 3k2h:A 503 20 0.1406 0.0179 0.4500 5.3 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
12 5vyq:A 235 55 0.2031 0.0553 0.2364 7.6 4q12:A, 4q12:B, 5vyq:B
13 8iu2:R 298 35 0.2188 0.0470 0.4000 7.6
14 3v7p:A 409 15 0.1094 0.0171 0.4667 8.8 4m51:A
15 2h6e:A 323 48 0.2344 0.0464 0.3125 9.0
16 3tbn:A 87 27 0.1875 0.1379 0.4444 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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