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BioLiP
>protein
GIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMP
GRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKATAFCTHVFPETAFIAVTSYQNHKI
TQLKIENNPFAKGFRG

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5flv:M 229 175 0.9830 0.7555 0.9886 6.85e-131 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
2 1h6f:B 186 181 0.6648 0.6290 0.6464 1.93e-84 1h6f:A
3 4a04:B 190 188 0.6364 0.5895 0.5957 1.35e-79 4a04:A
4 6f59:B 185 177 0.5568 0.5297 0.5537 1.26e-67 8a7n:A, 8cdn:A, 6f58:A, 6f58:B, 6f59:A, 8fmu:A, 8fmu:B, 5qrf:A, 5qrg:A, 5qrh:A, 5qri:A, 5qrj:A, 5qrk:A, 5qrl:A, 5qrm:A, 5qrn:A, 5qro:A, 5qrq:A, 5qrr:A, 5qrs:A, 5qrt:A, 5qru:A, 5qrv:A, 5qrw:A, 5qrx:A, 5qry:A, 5qrz:A, 5qs0:A, 5qs1:A, 5qs3:A, 5qs4:A, 5qs5:A, 5qs6:A, 5qs7:A, 5qs9:A, 5qsa:A, 5qsb:A, 5qsc:A, 5qsd:A, 5qse:A, 5qsf:A, 5qsg:A, 5qsh:A, 5qsj:A, 5qsk:A, 5qsl:A, 5qt0:A, 1xbr:A, 1xbr:B, 7zk2:A, 6zu8:A
5 5t1j:B 192 189 0.6080 0.5573 0.5661 1.29e-65 5t1j:A
6 6b2e:B 193 84 0.1136 0.1036 0.2381 0.89 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
7 2ig6:A 143 36 0.0739 0.0909 0.3611 0.96 2ig6:B
8 7mqa:NB 103 60 0.1080 0.1845 0.3167 1.8 7mq8:NB, 7mq9:NB
9 2x2t:A 152 36 0.0795 0.0921 0.3889 3.7
10 5h3h:B 269 65 0.1080 0.0706 0.2923 5.0 5h3h:A
11 2ber:A 601 18 0.0568 0.0166 0.5556 6.3 2bzd:A, 2bzd:B, 2bzd:C, 1eus:A, 1euu:A, 1w8n:A, 1w8o:A, 1wcq:A, 1wcq:B, 1wcq:C
12 2vgr:C 213 21 0.0511 0.0423 0.4286 7.5 2vck:A, 2vck:B, 2vck:C, 2vck:D, 2vgr:A, 2vgr:B, 2vgr:D, 2x9i:A, 2x9i:B, 2x9i:C, 2x9i:D, 2x9j:A, 2x9j:B
13 2r5w:B 345 33 0.0568 0.0290 0.3030 8.2 2qjt:B, 2qjt:A, 2r5w:A
14 2pzi:A 654 50 0.0625 0.0168 0.2200 9.2 2pzi:B, 7q52:AAA, 4y0x:A, 4y12:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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