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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSG
RERDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAELE

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d8f:A 127 127 1.0000 1.0000 1.0000 5.46e-93 3d8f:C
2 2nmb:A 147 60 0.1417 0.1224 0.3000 0.002 1ddm:A, 5yi7:A, 5yi7:C, 5yi8:A
3 6dii:H 616 37 0.1260 0.0260 0.4324 0.016 6dii:A, 6dii:B, 6dii:C, 6dii:D, 6dii:E, 6dii:F, 6dii:G, 6dii:I, 6dii:J, 6dii:K, 6dii:L, 8ey1:D, 8ey1:F, 8ey1:H, 8ey1:J, 8ey1:L, 8ey9:B, 8ey9:E, 8ey9:F, 8ey9:G, 8ey9:H, 8ey9:I
4 3so6:A 137 106 0.2520 0.2336 0.3019 0.061
5 5njk:A 147 60 0.1260 0.1088 0.2667 0.19 5njj:A, 5njj:C, 5njj:B, 5njj:D, 5njk:E, 5njk:C, 5njk:D, 5njk:B, 5njk:F
6 6lsr:0 190 55 0.1417 0.0947 0.3273 1.4 6lqm:0
7 3dxd:A 131 70 0.1417 0.1374 0.2571 1.5 3dxc:A, 3dxc:C, 3dxd:C, 3dxe:A, 3dxe:C
8 2ka9:A 189 50 0.1024 0.0688 0.2600 1.8 8cn1:B, 8cn1:A, 8cn1:E, 8cn1:D, 2mho:A, 1rgr:A, 3rl7:A, 3rl7:F, 3rl7:D, 3rl7:C, 3rl7:E, 6spv:A, 6spz:A
9 7pc3:A 405 94 0.1890 0.0593 0.2553 1.8 2awu:B, 2aww:A, 2awx:B, 8cn3:A, 8cn3:B, 2g2l:A, 2g2l:B, 4g69:A, 2i0l:A, 2i0l:B, 2m3m:A, 4oaj:A, 2oqs:A, 3rl8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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