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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIINRVVQLLIISYFVGWVFLHEKAYQVRDTAIESSVVTKVKGSGLYANRVMDVSDYVTPPQGTSVFVIITKMIVTENQM
QGFCPESEEKYRCVSDSQCGPERLPGGGILTGRCVNYSSVLRTCEIQGWCPTEVDTVETPIMMEAENFTIFIKNSIRFPL
FNFEKGNLLPNLTARDMKTCRFHPDKDPFCPILRVGDVVKFAGQDFAKLARTGGVLGIKIGWVCDLDKAWDQCIPKYSFT
RLDSVSEKSSVSPGYNFRFAKYYKMENGSEYRTLLKAFGIRFDVLVYGNAGKFNIIPTIISSVAAFTSVGVGTVLCDIIL
LNF

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ah4:B 357 323 1.0000 0.9048 1.0000 0.0 6ah4:C, 6ah4:A, 6ah5:C, 6ah5:A, 6ah5:B, 9ik1:A, 9ik1:B, 9ik1:C, 5svk:A, 5svk:B, 5svl:A, 5svl:B, 5svm:A, 5svm:B, 5svp:A, 5svp:B, 5svq:A, 5svr:A, 5yve:A
2 4dw1:A 324 325 0.4768 0.4753 0.4738 4.47e-104 8jv5:A, 8jv5:B, 8jv5:C, 8jv6:A, 8jv6:B, 8jv6:C, 5wzy:A
3 5f1c:B 355 353 0.4272 0.3887 0.3909 2.63e-81 5f1c:A, 5f1c:C
4 5u1x:A 321 327 0.4334 0.4361 0.4281 3.16e-80 8jv7:A, 8jv7:B, 8jv7:C, 8jv8:A, 8jv8:B, 8jv8:C, 5u1u:A, 5u1y:A
5 6u9w:A 562 341 0.4365 0.2509 0.4135 7.16e-77 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
6 5xw6:C 320 313 0.3715 0.3750 0.3834 1.57e-72 5xw6:B, 5xw6:A
7 4w97:A 196 63 0.0588 0.0969 0.3016 2.7
8 7k9y:A 425 150 0.1022 0.0776 0.2200 2.9 6ar1:A, 6ar1:D, 6ar3:A, 6ar3:D, 7k9y:D
9 1cw0:A 155 32 0.0464 0.0968 0.4688 8.3 1odg:A, 1vsr:A
10 3b69:A 626 22 0.0341 0.0176 0.5000 8.6 2ah2:A, 1ms0:A, 1ms0:B, 1ms1:A, 1ms1:B, 1ms8:A, 1ms8:B, 1ms9:A, 1ms9:B, 3pjq:A, 1s0i:A, 1s0j:A
11 6g1g:A 211 31 0.0310 0.0474 0.3226 9.6 6g1i:A, 6g1i:B, 2xqo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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