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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIIEFHVIGNSNRRVLLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAV
TSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPY

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5h86:A 167 165 1.0000 0.9581 0.9697 1.39e-117 8e6o:A, 8e6o:B, 8e6o:C, 8h65:C, 8h65:D, 8h65:E, 8h65:F, 8h65:B, 8h65:A, 8h65:G, 8h65:H, 8h66:E, 8h66:C, 8h66:D, 8h66:F, 8h66:B, 8h66:A, 8h66:G, 8h66:H, 8h6c:C, 8h6c:D, 8h6c:E, 8h6c:F, 8h6c:B, 8h6c:A, 8h6c:G, 8h6c:H, 8h6d:C, 8h6d:D, 8h6d:E, 8h6d:F, 8h6d:B, 8h6d:A, 8h6d:G, 8h6d:H, 5h84:A, 5trl:C, 5trl:D, 5trl:E, 5trl:F, 5trl:B, 5trl:A, 5trl:G, 5trl:H, 1z4r:A
2 1cm0:A 162 161 0.8750 0.8642 0.8696 9.30e-106 1cm0:B, 4nsq:A, 4nsq:B, 4nsq:C, 4nsq:D
3 5gcn:A 166 162 0.5375 0.5181 0.5309 1.43e-61 1m1d:A, 1m1d:C, 1pu9:A, 1pua:A, 1q2c:A, 1q2d:A, 1qsn:A, 1qsr:A
4 3b8g:A 424 94 0.1625 0.0613 0.2766 0.18 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
5 3ld2:B 162 123 0.2000 0.1975 0.2602 0.34 3ld2:A, 3ld2:C, 3ld2:D
6 1o0s:A 602 71 0.1187 0.0316 0.2676 2.0 1llq:A, 1llq:B, 1o0s:B
7 3zyv:B 1262 156 0.2250 0.0285 0.2308 3.9 3zyv:A, 3zyv:C, 3zyv:D
8 7daj:B 150 45 0.0750 0.0800 0.2667 4.5 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
9 1tiq:A 173 45 0.1062 0.0983 0.3778 4.8 1tiq:B
10 4axs:A 291 21 0.0625 0.0344 0.4762 5.9
11 2bsw:A 145 43 0.0938 0.1034 0.3488 9.3 2jdc:A, 2jdd:A
12 1b06:A 208 59 0.1000 0.0769 0.2712 9.5 1b06:B, 1b06:C, 1b06:D, 1b06:E, 1b06:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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