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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVNAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDMSKYNLAPAFVADESTNIVLVVDQTFNCMS
VTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVTSQYG
FEALLAGKPVTCFGQPWYASWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQRR
HH

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fux:A 322 322 1.0000 1.0000 1.0000 0.0 8fuw:A, 8fux:B, 6mgc:A
2 6mgb:A 321 320 0.4317 0.4330 0.4344 5.01e-76
3 8csd:A 397 220 0.1646 0.1335 0.2409 0.003 8csb:A, 8csb:B, 8csc:A, 8csc:B, 8csd:B, 8cse:B, 8cse:A, 8csf:A, 8csf:B, 5fa1:A, 5fa1:B
4 1llc:A 320 45 0.0528 0.0531 0.3778 4.8 6j9t:B, 6j9t:D, 6j9t:E, 6j9t:C, 6j9t:F, 6j9u:A, 6j9u:C, 6j9u:D
5 3e6u:A 409 81 0.0839 0.0660 0.3333 5.3 8czk:A, 8czk:B, 8czl:A, 8czl:B, 8d0v:A, 8d0v:B, 8d19:A, 8d19:B, 3e6u:C, 3e6u:B, 3e6u:D, 3e73:A, 3e73:B
6 3g5s:A 424 103 0.0932 0.0708 0.2913 6.2 3g5q:A, 3g5r:A
7 2w98:B 355 41 0.0435 0.0394 0.3415 6.9 2vna:A, 2w4q:A, 2w98:A, 2zb4:A, 2zb7:A, 2zb8:A
8 3ijq:A 337 29 0.0342 0.0326 0.3793 8.2 3iji:A, 3iji:B, 3ijl:A, 3ijl:B, 3ijq:B
9 8h4v:A 148 31 0.0373 0.0811 0.3871 8.9 8h4v:B, 8hb5:A, 5kth:A, 5kti:A, 4kzv:A, 4kzv:B, 4kzw:A, 4kzw:B, 4zrv:A, 4zrv:C, 4zrv:B, 4zrw:A
10 5oql:M 284 46 0.0466 0.0528 0.3261 9.8
11 8wg1:D 685 71 0.0559 0.0263 0.2535 9.8 8wg0:A, 8wg0:B, 8wg0:C, 8wg0:D, 8wg1:A, 8wg1:B, 8wg1:C, 8wg2:A, 8wg2:B, 8wg2:C, 8wg2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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