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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVNAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDMSKYNLAPAFVADESERTNIVLVVDQTFNC
MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVTSQYGFEALL
AGKPVTCFGQPWYASWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQRRHHH

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fux:A 322 324 0.9906 0.9783 0.9722 0.0 8fuw:A, 8fux:B, 6mgc:A
2 6mgb:A 321 323 0.4308 0.4268 0.4241 1.58e-70
3 8csd:A 397 212 0.1541 0.1234 0.2311 0.002 8csb:A, 8csb:B, 8csc:A, 8csc:B, 8csd:B, 8cse:B, 8cse:A, 8csf:A, 8csf:B, 5fa1:A, 5fa1:B
4 4rk9:A 384 101 0.0849 0.0703 0.2673 0.085 4rk9:B
5 4iil:A 314 100 0.0755 0.0764 0.2400 0.27
6 6edw:C 724 193 0.1541 0.0677 0.2539 0.43 6ee1:A, 6ee1:C
7 2w98:B 355 62 0.0629 0.0563 0.3226 0.48 2vna:A, 2w4q:A, 2w98:A, 2zb4:A, 2zb7:A, 2zb8:A
8 6z9l:A 744 129 0.1132 0.0484 0.2791 0.84 6z9k:A, 6z9k:B
9 4arz:A 291 85 0.0629 0.0687 0.2353 1.8 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
10 6edw:B 746 133 0.1069 0.0456 0.2556 6.2 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
11 6edz:C 723 133 0.1069 0.0470 0.2556 6.5
12 3ijq:A 337 29 0.0346 0.0326 0.3793 7.6 3iji:A, 3iji:B, 3ijl:A, 3ijl:B, 3ijq:B
13 3e6u:A 409 40 0.0535 0.0416 0.4250 8.0 8czk:A, 8czk:B, 8czl:A, 8czl:B, 8d0v:A, 8d0v:B, 8d19:A, 8d19:B, 3e6u:C, 3e6u:B, 3e6u:D, 3e73:A, 3e73:B
14 8h4v:A 148 31 0.0377 0.0811 0.3871 8.5 8h4v:B, 8hb5:A, 5kth:A, 5kti:A, 4kzv:A, 4kzv:B, 4kzw:A, 4kzw:B, 4zrv:A, 4zrv:C, 4zrv:B, 4zrw:A
15 5oql:M 284 46 0.0472 0.0528 0.3261 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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