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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIGEVRDMTHVYDADFPTYFGAPGIEAVQNFNFKEHGFNLFTLTLNEHTGTHVDAPLHFSADGQSVDEIPVGNLVCPLCV
VHIHEKAAADADAQVTPDDLKAWISAHGPIPDGACVAMHSGWAGKTGGAGYRNADSEGKMHFPGFHVEAAQMLIEETGAV
AMAVDTLSLDHGPSADFATHYAWLPTNRYGIENLANLDKVPASGATLIVGAPNHRGGSGGPARIFAMV

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8f9x:A 230 228 1.0000 0.9913 1.0000 9.61e-171 8f9x:B, 8f9x:C, 8f9x:D, 8f9x:E, 8f9x:F, 8f9x:G, 8f9x:H, 8f9x:I, 8f9x:J
2 5nna:D 264 244 0.3728 0.3220 0.3484 1.36e-39 5nna:A, 5nna:B, 5nna:C, 5nnb:A, 5nnb:B, 5nnb:C, 5nnb:D
3 5nmp:A 265 248 0.3640 0.3132 0.3347 2.52e-30 5nmp:B, 5nmp:C, 5nmp:D, 5nmp:E, 5nmp:F, 5nmp:G, 5nmp:H, 5nmp:I, 5nmp:J
4 4m8d:D 263 214 0.3114 0.2700 0.3318 1.01e-23 4j0n:A, 4j0n:B, 4m8d:A, 4m8d:B, 4m8d:C, 4m8d:E, 4m8d:F, 4m8d:G, 4m8d:H, 4m8d:I, 4m8d:J, 4m8d:K, 4m8d:L
5 8hmo:A 205 189 0.2281 0.2537 0.2751 2.27e-10 8hmo:B, 8hmo:C, 8hmo:D, 8hmo:E, 8hmo:F
6 4cob:A 206 208 0.2368 0.2621 0.2596 3.90e-07 4cob:B
7 4cog:A 207 58 0.1053 0.1159 0.4138 1.46e-06 4cog:B, 4cog:C, 4cog:D
8 1r61:A 205 225 0.2588 0.2878 0.2622 3.11e-06 3krv:B, 1r61:B
9 4co9:A 207 78 0.1053 0.1159 0.3077 7.22e-05 4co9:B, 4co9:C, 4co9:D, 4cz1:A, 4cz1:B, 4cz1:C, 4cz1:D
10 7aor:ab 1110 51 0.0658 0.0135 0.2941 2.2
11 5xtc:h 104 57 0.0746 0.1635 0.2982 2.2 5xtd:h, 5xth:h, 5xti:h, 5xti:Bh
12 5fd6:A 135 21 0.0482 0.0815 0.5238 2.3 5fd6:B, 5fd6:C, 5fd6:D
13 5dbj:E 437 72 0.0921 0.0481 0.2917 5.1 5dbj:A, 5dbj:B, 5dbj:C, 5dbj:D
14 1e03:L 423 45 0.0570 0.0307 0.2889 5.1 1azx:I, 1azx:L, 2b5t:I, 1br8:I, 1e03:I, 3evj:I, 3evj:L, 2gd4:I, 2gd4:C, 1jvq:I, 3kcg:I, 1lk6:I, 1nq9:I, 1nq9:L, 1r1l:I, 1sr5:A, 1tb6:I
15 8pm4:A 604 49 0.0833 0.0315 0.3878 5.2
16 1mpy:A 307 69 0.0833 0.0619 0.2754 5.7 1mpy:B, 1mpy:C, 1mpy:D
17 7rc6:A 376 64 0.0921 0.0559 0.3281 8.9 7rc2:A, 7rc3:A, 7rc4:A, 7rc5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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