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BioLiP Library
>protein
GIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGIHKLWEANNVGKRYEDIPVLGQKL

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e73:V 59 59 1.0000 1.0000 1.0000 8.06e-39 8e73:J
2 8bel:I 57 56 0.7797 0.8070 0.8214 3.93e-31 8bel:S, 8bpx:AI, 8bpx:BI, 8bq5:AI, 8bq5:BI, 8bq6:AI, 8bq6:BI
3 1be3:J 62 47 0.2881 0.2742 0.3617 5.22e-05 1bgy:J, 1bgy:V, 7dkf:J1, 7dkf:V1, 5luf:j, 5luf:v, 5nmi:W, 5nmi:J, 1sqp:J, 2ybb:j, 2ybb:J
4 5xte:D 62 48 0.2712 0.2581 0.3333 6.19e-04 5xte:Q, 5xth:AD, 5xth:AQ, 5xti:AD, 5xti:AQ
5 1iyb:A 208 19 0.1864 0.0529 0.5789 0.21 1iyb:B
6 1h2b:B 344 44 0.2881 0.0494 0.3864 0.81 1h2b:A
7 4twe:A 706 34 0.2373 0.0198 0.4118 2.9 4twe:B
8 2cy2:A 174 20 0.1695 0.0575 0.5000 3.7
9 8auv:G 83 34 0.1356 0.0964 0.2353 6.7 8b2l:G1
10 5edf:A 224 49 0.2203 0.0580 0.2653 6.7
11 3if2:A 437 46 0.2542 0.0343 0.3261 8.5 3if2:B
12 3waj:A 793 38 0.2203 0.0164 0.3421 8.6
13 7e9s:A 867 38 0.2203 0.0150 0.3421 8.6 5gmy:A, 3wak:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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