Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
>protein
GIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGIHKLWEANNVGKRYEDIPVLGQK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e73:V 59 58 1.0000 0.9831 1.0000 3.76e-38 8e73:J
2 8bel:I 57 56 0.7931 0.8070 0.8214 4.44e-31 8bel:S, 8bpx:AI, 8bpx:BI, 8bq5:AI, 8bq5:BI, 8bq6:AI, 8bq6:BI
3 1be3:J 62 47 0.2931 0.2742 0.3617 4.71e-05 1bgy:J, 1bgy:V, 7dkf:J1, 7dkf:V1, 5luf:j, 5luf:v, 5nmi:W, 5nmi:J, 1sqp:J, 2ybb:j, 2ybb:J
4 5xte:D 62 48 0.2759 0.2581 0.3333 5.59e-04 5xte:Q, 5xth:AD, 5xth:AQ, 5xti:AD, 5xti:AQ
5 1iyb:A 208 19 0.1897 0.0529 0.5789 0.20 1iyb:B
6 1h2b:B 344 44 0.2931 0.0494 0.3864 0.65 1h2b:A
7 4twe:A 706 34 0.2414 0.0198 0.4118 2.8 4twe:B
8 2cy2:A 174 20 0.1724 0.0575 0.5000 3.2
9 8auv:G 83 34 0.1379 0.0964 0.2353 6.1 8b2l:G1
10 5edf:A 224 49 0.2241 0.0580 0.2653 7.5
11 7e9s:A 867 38 0.2241 0.0150 0.3421 8.0 5gmy:A, 3wak:A
12 3if2:A 437 46 0.2586 0.0343 0.3261 8.2 3if2:B
13 3waj:A 793 38 0.2241 0.0164 0.3421 8.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417