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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIDPFTKTSLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVGPILKYYRHSINALN
VYLGLNNGKVLLSQKSKMPELRDDLDIKTKDWYQEALKTNDIFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPS
EDLQNLVAKTPGNTFLFDQKNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACITES
ADIINKPIYKA

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6w3o:B 252 252 1.0000 0.9960 0.9960 0.0 6w3o:A, 6w3p:A, 6w3p:B, 6w3r:A, 6w3r:B, 6w3s:A, 6w3s:B, 6w3t:A, 6w3t:B, 6w3v:A, 6w3v:B, 6w3x:A, 6w3x:B, 6w3y:A, 6w3y:B, 4xmr:A, 4xmr:B
2 6py3:B 238 119 0.1434 0.1513 0.3025 1.27e-09 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
3 5ltx:A 243 153 0.1434 0.1481 0.2353 3.03e-07 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B
4 5lt9:B 253 159 0.1474 0.1462 0.2327 3.21e-04 5lt9:A, 5lto:A, 5lto:B
5 6d8v:A 269 97 0.1235 0.1152 0.3196 0.003
6 6f9g:D 262 67 0.0996 0.0954 0.3731 0.004 6f9g:A, 6f9g:B, 6f9g:C, 6f9g:E
7 6fu4:A 297 74 0.0956 0.0808 0.3243 0.016 6fu4:B, 6fu4:C, 6fu4:D
8 2o2c:A 564 119 0.1195 0.0532 0.2521 0.20 2o2c:B, 2o2c:C
9 6ior:A 241 64 0.0677 0.0705 0.2656 0.87 6iop:A, 6iop:B, 6ioq:A, 6ior:B, 6ior:C, 6ior:D, 6ios:A, 6iot:A, 6iot:B, 6iot:C, 6iot:D, 6iou:A, 6iou:B
10 8bmv:B 249 83 0.0876 0.0884 0.2651 1.1 8bmv:A
11 1l1q:A 181 61 0.0876 0.1215 0.3607 1.1 1l1r:A
12 5ave:A 252 93 0.0797 0.0794 0.2151 1.5 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
13 6rm3:LLL 51 24 0.0359 0.1765 0.3750 2.9
14 3fid:A 296 88 0.1036 0.0878 0.2955 3.5 3fid:B
15 3ksg:A 153 19 0.0478 0.0784 0.6316 6.1 3ksg:B
16 7ase:5 421 30 0.0398 0.0238 0.3333 6.8
17 6l7x:A 203 31 0.0518 0.0640 0.4194 8.8 6l7w:A, 6l7y:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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