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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GICKSSDCIKSAARLIQNMDATAEPCTDFFKYACGGWLKRNVIPETSSRYSNFDILRDELEVILKDVLQEPKTEDIVAVQ
KAKTLYRSCVNETAIDSRGGQPLLKLLPDVYGWPVATQNWEQTYGTSWSAEKSIAQLNSKYGKKVLINFFVGTDDKNSMN
HIIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMIAVAKLIRQEEGLPIDENQISVEMNKVMELEKEIANATTKSEDRN
DPMLLYNKMTLAQIQNNFSLEINGKPFSWSNFTNEIMSTVNINIPNEEDVVVYAPEYLIKLKPILTKYSPRDLQNLMSWR
FIMDLVSSLSRTYKDSRNAFRKALYGTTSESATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQT
LDDLTWMDAETKKKAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDE
WITGAAIVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSANN
FKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGIGQAYRAYQNYVKKNGEEKLLPGIDLNHKQLFFLNFAQVW
CGTYRPEYAVNSIKTDVHSPGNFRIIGSLQNSVEFSEAFQCPKNSYMNPEKKCRVW

The query sequence (length=696) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6suk:A 698 696 0.9397 0.9370 0.9397 0.0 4cth:A, 1dmt:A, 6gid:A, 5jmy:A, 5jmy:B, 2qpj:A, 1r1h:A, 1r1i:A, 1r1j:A, 6sh1:AAA, 6sh1:CCC, 6sh2:AAA, 6svy:A, 6thp:A, 6thp:B, 5v48:A, 5v48:B, 4xbh:A, 4xbh:B, 6xvp:A, 1y8j:A, 2yb9:A, 4zr5:A, 4zr5:B
2 3dwb:A 660 698 0.3994 0.4212 0.3983 2.57e-179
3 3zuk:A 657 692 0.2974 0.3151 0.2991 3.06e-93 3zuk:B
4 4iuw:A 630 445 0.1839 0.2032 0.2876 1.22e-54
5 8pjn:b 296 43 0.0230 0.0541 0.3721 2.4
6 7op8:A 1118 60 0.0230 0.0143 0.2667 2.8 7op1:A, 7op3:A, 7op5:A
7 7vg3:A 860 52 0.0244 0.0198 0.3269 5.1 7vg2:A
8 8cej:A 449 42 0.0259 0.0401 0.4286 6.0 8cej:B, 8cej:C, 8cej:D, 8cek:A, 8cek:B, 8cek:C, 8cek:D
9 5trq:A 283 191 0.0675 0.1661 0.2461 6.2 8acv:A, 8acv:B, 8aut:A, 8aut:B, 8aut:C, 8aut:D, 6gem:A, 6gem:B, 6gem:C, 6gem:D, 5iqs:A, 5iqs:B, 5iqs:C, 5iqt:A, 5iqt:B, 5iqt:C, 5iqu:A, 5iqv:A, 5iqv:B, 5iqv:C, 5j4r:A, 5t22:A, 5t22:B
10 4qa0:A 371 54 0.0187 0.0350 0.2407 7.6 5bwz:A, 5bwz:B, 5d1b:A, 5d1b:B, 5d1c:A, 5d1c:B, 5d1d:A, 5d1d:B, 5dc5:A, 5dc5:B, 5dc6:A, 5dc6:B, 5dc7:A, 5dc7:B, 5dc8:A, 5dc8:B, 3ew8:A, 3ewf:A, 3ewf:B, 3ewf:C, 3ewf:D, 3ezp:A, 3ezp:B, 3ezt:A, 3ezt:B, 3f06:A, 3f06:B, 3f07:A, 3f07:B, 3f0r:A, 3f0r:B, 3f0r:C, 5fcw:A, 5fcw:B, 6hsk:A, 6hsk:B, 7jvu:A, 7jvu:B, 7jvv:A, 7jvv:B, 7jvw:A, 7jvw:B, 3mz3:A, 3mz3:B, 3mz4:A, 3mz4:B, 3mz6:A, 3mz7:A, 6oda:A, 6oda:B, 6oda:C, 6odb:A, 6odb:B, 6odb:C, 6odc:A, 6odc:B, 6odc:C, 4qa0:B, 4qa1:A, 4qa1:B, 4qa1:C, 4qa1:D, 4qa2:A, 4qa2:B, 4qa3:A, 4qa3:B, 4qa4:A, 4qa5:A, 4qa5:B, 4qa6:A, 4qa6:B, 4qa7:A, 4rn0:A, 4rn0:B, 4rn1:A, 4rn1:B, 4rn2:A, 4rn2:B, 3rqd:A, 3rqd:B, 1t64:A, 1t64:B, 1t67:A, 1t69:A, 5ths:A, 5ths:B, 5tht:A, 5tht:B, 5tht:C, 5tht:D, 5thu:A, 5thu:B, 5thv:A, 5thv:B, 2v5w:B, 2v5w:A, 2v5x:A, 2v5x:B, 5vi6:A, 1vkg:A, 1vkg:B, 1w22:A, 1w22:B
11 3sfh:A 342 54 0.0187 0.0380 0.2407 8.7 3f07:C, 3sff:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218