Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIASGKVWRDTDGNVINAHGGGILFHEGKYYWFGEHRPASGFVTEKGINCYSSTDLYNWKSEGIALAVSEEEGHDIEKGC
IMERPKVIYNAKTGKFVMWLHLELKGQGYGPARAAVAVSDSPAGPYRFIRSGRVNPGAYPLNMTRKERKMKWNPEEYKEW
WTPKWYEAIAKGMFVKRDLKDGQMSRDMTLFVDDDGKAYHIYSSEDNLTLQIAELADDYLSHTGKYIRIFPGGHNEAPAI
FKKEGTYWMITSGCTGWDPNKARLLTADSMLGEWKQLPNPCVGEDADKTFGGQSTYILPLPEKGQFFFMADMWRPKSLAD
SRYIWLPVQFDDKGVPFIKWMDRWNFD

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6eug:A 347 347 1.0000 1.0000 1.0000 0.0 6euh:A, 6euh:B, 6euh:C, 6eui:A
2 6euf:A 472 349 0.3862 0.2839 0.3840 1.23e-72 6euf:B, 6euf:C, 6euf:D
3 3vsz:C 482 336 0.3689 0.2656 0.3810 9.33e-64 3vsz:A, 3vsz:B, 3vsz:E, 3vsz:F, 3vt0:A, 3vt0:B, 3vt0:C, 3vt0:E, 3vt0:F, 3vt1:B, 3vt1:C, 3vt1:E, 3vt1:F, 3vt1:A, 3vt2:A, 3vt2:B, 3vt2:C, 3vt2:D, 3vt2:E, 3vt2:F
4 7byv:A 428 348 0.3314 0.2687 0.3305 2.44e-52 7bys:A, 7bys:B, 7byt:A, 7byx:A, 7byx:B, 7byx:C, 7byx:D
5 3kst:A 291 257 0.1902 0.2268 0.2568 1.21e-08 3kst:B
6 8hcj:D 433 244 0.1671 0.1339 0.2377 4.91e-04 8hcj:E, 8hcj:H, 8hcj:A, 8hcj:B, 8hcj:G, 8hcj:C, 8hcj:F
7 3qed:B 305 109 0.0893 0.1016 0.2844 0.38 3qed:A, 3qed:C, 3qed:D, 3qee:A, 3qee:B, 3qef:A, 3qef:B
8 7vcp:A 490 79 0.0634 0.0449 0.2785 0.41
9 5msx:C 440 66 0.0548 0.0432 0.2879 0.56 5msx:A, 5msx:B
10 5z5d:A 504 119 0.0951 0.0655 0.2773 1.9 5z5f:A, 5z5h:A, 5z5i:A
11 8k7p:A 382 147 0.1153 0.1047 0.2721 2.1 8k7p:B, 8k7q:A, 8k7q:B, 6ksi:A, 6ksi:B, 6ksl:A, 6ksl:B, 6ksm:A, 6ksm:B, 8s9r:A, 8s9r:B, 8yib:A, 8yib:B
12 6ms3:A 512 121 0.1009 0.0684 0.2893 2.4 6ms2:A, 6ms3:B
13 4n2z:A 318 138 0.0893 0.0975 0.2246 2.6
14 5jox:A 502 143 0.0893 0.0618 0.2168 2.7 5jox:B, 5joy:A, 5joy:B
15 3rwk:X 493 35 0.0346 0.0243 0.3429 3.3 3sc7:X
16 3pij:B 526 54 0.0519 0.0342 0.3333 3.5 3pij:A
17 5zi2:A 339 68 0.0576 0.0590 0.2941 3.9 5zi2:B, 5zi4:A, 5zi4:B
18 8bx8:C 3947 110 0.0807 0.0071 0.2545 4.4 7k58:C, 7k5b:C, 7kek:C
19 3lv4:A 441 135 0.0951 0.0748 0.2444 4.9 3lv4:B
20 5gll:A 331 37 0.0432 0.0453 0.4054 6.0 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
21 5m8e:A 323 194 0.1153 0.1238 0.2062 6.3 5m8e:B
22 4mlg:G 324 108 0.0720 0.0772 0.2315 7.2 4mlg:A, 4mlg:B, 4mlg:C, 4mlg:D, 4mlg:E, 4mlg:F, 4mlg:H, 4mlg:I, 4mlg:J, 4mlg:K, 4mlg:L

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218