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BioLiP
>protein
GHMSTPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLT
EGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPG
TGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDN
TIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z6c:BBB 317 317 1.0000 1.0000 1.0000 0.0 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
2 5eo8:A 311 315 0.8139 0.8296 0.8190 0.0 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
3 6trv:AAA 294 313 0.4069 0.4388 0.4121 3.75e-60 6trv:BBB
4 5mxc:A 313 320 0.3218 0.3259 0.3187 7.11e-33 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
5 5mxc:A 313 93 0.0946 0.0958 0.3226 0.020 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
6 7c39:A 346 249 0.2555 0.2341 0.3253 3.12e-20 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
7 7c39:A 346 215 0.1735 0.1590 0.2558 2.34e-07 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
8 7c39:A 346 153 0.1293 0.1185 0.2680 0.032 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
9 7e7v:A 271 227 0.2177 0.2546 0.3040 2.27e-15 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
10 7e7v:A 271 122 0.1262 0.1476 0.3279 3.24e-04 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
11 6htn:A 143 143 0.1388 0.3077 0.3077 1.69e-09 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
12 6htn:A 143 130 0.1167 0.2587 0.2846 5.41e-07 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
13 6zfc:A 87 82 0.1009 0.3678 0.3902 6.54e-07 6zfc:B, 6zfc:C, 6zfc:D, 6zfc:E, 6zfc:F, 3zw0:C, 3zw1:A, 3zw1:B, 3zw2:A, 3zw2:B, 3zw2:C, 3zwe:A, 3zwe:B, 3zwe:C, 3zzv:A, 3zzv:B, 3zzv:C
14 6f37:A 113 103 0.1167 0.3274 0.3592 7.20e-05 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
15 6bk8:P 653 68 0.0662 0.0322 0.3088 0.44 6exn:V, 5mq0:V
16 1lgr:A 445 62 0.0536 0.0382 0.2742 1.3 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
17 8em7:A 4378 50 0.0442 0.0032 0.2800 3.4 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
18 1f1h:A 468 50 0.0505 0.0342 0.3200 3.8 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
19 8em4:A 3818 50 0.0442 0.0037 0.2800 4.0 8em4:B
20 3v97:A 667 63 0.0536 0.0255 0.2698 7.1 3v8v:A
21 3p3c:A 272 25 0.0347 0.0404 0.4400 8.9 5dro:A, 5dro:B, 5drp:A, 5drp:B, 2go3:A, 2go3:B, 2go4:A, 2go4:B, 2ier:A, 2ier:B, 2ies:A, 2ies:B, 6ih0:A, 2j65:A, 2j65:B, 2jt2:A, 2o3z:A, 2o3z:B, 4oze:A, 4oze:B, 1p42:A, 1p42:B, 3p76:A, 4u3b:A, 4u3d:A, 5u86:A, 1xxe:A, 1yh8:A, 1yh8:B, 1yhc:A, 1yhc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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