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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GHMRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVL

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1c9q:A 117 76 0.9620 0.6496 1.0000 2.38e-55 8aza:C, 1i3o:E, 1i3o:F, 4j3y:A, 4j3y:C, 4j44:A, 4j44:C, 4j45:A, 4j45:C, 4j46:A, 4j46:C, 4j47:A, 4j47:C, 4j48:A, 4j48:C, 4kju:A, 4kju:C, 4kjv:A, 4kjv:C, 4wvs:A, 4wvt:A, 4wvt:B, 4wvu:A
2 7qgj:A 79 72 0.5823 0.5823 0.6389 2.36e-28 7qgj:B
3 5yud:A 1238 71 0.5190 0.0331 0.5775 2.04e-25
4 5yud:A 1238 79 0.3797 0.0242 0.3797 8.32e-11
5 7rav:A 773 71 0.5190 0.0530 0.5775 6.28e-25
6 7rav:A 773 69 0.3291 0.0336 0.3768 9.31e-11
7 7rav:A 773 79 0.3797 0.0388 0.3797 1.79e-10
8 8fvu:A 1361 79 0.5190 0.0301 0.5190 3.42e-22 2vm5:A
9 8fvu:A 1361 68 0.4557 0.0265 0.5294 1.33e-20 2vm5:A
10 8fvu:A 1361 75 0.3544 0.0206 0.3733 1.96e-12 2vm5:A
11 3t6p:A 330 73 0.4177 0.1000 0.4521 6.11e-22 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
12 2uvl:B 95 77 0.4304 0.3579 0.4416 1.05e-21 2uvl:A
13 3f7g:B 101 74 0.4684 0.3663 0.5000 1.52e-21 3f7g:A, 3f7g:C, 3f7g:D, 3f7g:E, 1oxn:E, 1oxn:A, 1oxn:B, 1oxn:C, 1oxn:D, 1oxq:E, 1oxq:A, 1oxq:B, 1oxq:C, 1oxq:D, 1oy7:E, 1oy7:A, 1oy7:B, 1oy7:C, 1oy7:D
14 4kmn:A 103 77 0.4304 0.3301 0.4416 1.62e-21 7trl:A
15 2i3h:B 95 74 0.4684 0.3895 0.5000 2.17e-21 3f7h:A, 3f7h:B, 3f7i:A, 3f7i:B, 3gt9:A, 3gt9:B, 3gta:A, 3gta:B, 2i3h:A, 2i3i:A, 2i3i:B, 1tw6:A, 1tw6:B, 3uw5:A, 3uw5:B
16 1jd5:A 105 73 0.4051 0.3048 0.4384 3.16e-19 1jd4:A, 1jd4:B, 1jd6:A, 1q4q:G, 1q4q:I, 1q4q:F, 1q4q:H, 1q4q:J, 1q4q:A, 1q4q:C, 1q4q:D, 1q4q:B, 1q4q:E
17 1xb0:F 103 76 0.4177 0.3204 0.4342 1.20e-17 1xb0:A, 1xb0:B, 1xb0:C, 1xb0:D, 1xb0:E, 1xb1:A, 1xb1:B, 1xb1:C, 1xb1:D, 1xb1:E, 1xb1:F
18 3m0d:D 75 68 0.3544 0.3733 0.4118 3.51e-17 3m0a:D, 7nk0:D, 7nk0:E
19 1f9x:A 117 76 0.3924 0.2650 0.4079 5.61e-17 5c0k:A, 5c0l:A, 5c3h:A, 5c3k:A, 5c7a:A, 5c7b:A, 5c7c:A, 5c7d:A, 5c83:A, 5c84:A, 3clx:D, 3clx:A, 3clx:B, 3clx:C, 3cm2:D, 3cm2:H, 3cm2:A, 3cm2:B, 3cm2:C, 3cm2:G, 3cm2:E, 3cm2:F, 3cm2:I, 3cm2:J, 3cm7:C, 3cm7:A, 3cm7:B, 3cm7:D, 4ec4:A, 4ec4:F, 4ec4:B, 4ec4:G, 4ec4:C, 4ec4:D, 4ec4:K, 4ec4:E, 4ec4:L, 4ec4:J, 3eyl:A, 3eyl:B, 6ey2:A, 6ey2:C, 6ey2:B, 6ey2:G, 6ey2:D, 6ey2:E, 6ey2:F, 6ey2:H, 1g3f:A, 1g73:C, 1g73:D, 3g76:A, 3g76:B, 3g76:C, 3g76:D, 3g76:E, 3g76:F, 3g76:G, 3g76:H, 8gh7:A, 8gh7:B, 6h6q:A, 6h6q:B, 6h6r:A, 3hl5:A, 3hl5:B, 4hy0:A, 4hy0:D, 4hy0:B, 4hy0:G, 4hy0:C, 4hy0:E, 4hy0:F, 4hy0:H, 2jk7:A, 4kmp:A, 4kmp:B, 5m6e:A, 5m6f:A, 5m6h:A, 5m6l:A, 5m6m:A, 1nw9:A, 2opy:A, 2opz:A, 2opz:B, 2opz:C, 2opz:D, 5oqw:A, 5oqw:B, 1tfq:A, 1tft:A, 2vsl:A
20 3m1d:A 78 68 0.3418 0.3462 0.3971 6.06e-17 3m1d:B
21 8atu:A 2837 76 0.4304 0.0120 0.4474 1.83e-16 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
22 8auw:A 2900 76 0.4304 0.0117 0.4474 1.83e-16
23 3sip:F 108 68 0.3924 0.2870 0.4559 4.19e-16 1sdz:A, 1se0:A, 3sip:E, 3siq:A, 3siq:B, 3siq:C, 3siq:D, 3siq:E, 3siq:F
24 2pop:D 80 65 0.3671 0.3625 0.4462 5.32e-16 6gjw:A, 6gjw:B, 6gjw:C, 6gjw:D, 4mtz:A, 4mtz:B, 4mtz:C, 4mtz:D, 4oxc:A, 4oxc:B, 4oxc:C, 4oxc:D, 2poi:A, 2pop:B, 6qci:A, 6qci:B, 6qci:C, 6qci:D, 2qra:D, 2qra:C, 2qra:B, 2qra:A
25 1m4m:A 112 76 0.3544 0.2500 0.3684 5.67e-12
26 3ued:C 139 70 0.3165 0.1799 0.3571 2.41e-09 4a0i:A, 4a0i:B, 4a0j:A, 4a0j:B, 4a0n:A, 1e31:A, 1e31:B, 1f3h:A, 1f3h:B, 7lbk:B, 7lbk:A, 7lbo:A, 7lbo:B, 7lbp:A, 7lbp:C, 7lbq:A, 2qfa:A, 2raw:A, 2rax:A, 2rax:E, 2rax:X, 6sho:A, 6sho:B, 3uec:A, 3ued:A, 3uee:A, 3uee:C, 3uef:A, 3uef:C, 3ueg:A, 3ueg:B, 3ueh:A, 3ueh:B, 3uei:A, 3uei:B, 3uig:A, 3uig:B, 3uih:A, 3uih:B, 3uii:A, 3uii:B, 3uij:A, 3uij:B, 3uik:A, 3uik:B, 1xox:A, 1xox:B, 6yie:A, 6yie:D, 6yif:A, 6yih:A
27 8q6z:A 390 41 0.1899 0.0385 0.3659 0.084
28 5myj:BN 121 52 0.2405 0.1570 0.3654 0.14
29 8a57:N 122 56 0.2278 0.1475 0.3214 0.17 8a5i:N, 8a63:N, 7aqc:K, 7aqd:K, 7as8:O, 7as9:O, 7asm:I, 7asn:G, 7aso:N, 7asp:I, 8buu:K, 6ddd:W, 6ddg:W, 6fxc:AI, 6fxc:BI, 6ha1:K, 6ha8:K, 5hkv:H, 5hl7:H, 6hma:I, 6htq:K, 3j3v:K, 3j3w:K, 3j9w:BN, 5li0:N, 5nd8:N, 5nd9:N, 5ngm:AI, 7nhk:N, 7nhl:N, 7nhm:N, 7nhn:N, 5njt:d, 5nrg:H, 7o5b:f, 6o8w:L, 6o8x:L, 6o8y:L, 6o8z:L, 6o90:L, 7ope:O, 8p2f:N, 8p2g:N, 8p2h:N, 7p48:I, 7p7q:N, 7p7r:N, 7p7s:N, 7p7t:N, 7p7u:N, 6ppf:K, 6ppk:K, 6pvk:K, 8qcq:K, 7qgu:K, 7qh4:K, 8qpp:f, 7qv1:K, 7qv2:K, 7qv3:K, 8r55:f, 6s0x:I, 6s0z:I, 6s12:I, 6s13:I, 8s1p:K, 8s1u:K, 7s9u:K, 7sae:K, 6sj6:N, 5t7v:LN, 5tcu:LN, 6tnn:d, 6tpq:d, 7ttu:W, 7ttw:W, 8uu4:M, 8uu5:M, 8uu6:M, 8uu7:M, 8uu8:M, 8uu9:M, 8uua:M, 6w6p:L, 4wce:H, 4wf9:H, 4wfa:H, 4wfb:H, 6wqn:W, 6wqq:W, 6wrs:W, 6wru:W, 6wu9:L, 8y36:I, 8y37:I, 8y38:I, 8y39:I, 6yef:N
30 4v4p:AN 122 54 0.2152 0.1393 0.3148 0.44 4v4r:BO, 4v4s:BO, 4v4t:BO
31 7jil:K 121 39 0.1646 0.1074 0.3333 0.63
32 6dzi:L 122 39 0.1772 0.1148 0.3590 0.89 6dzp:L, 7f0d:K, 8fr8:U, 8kab:L, 7kgb:K, 7msc:K, 7msh:K, 7msm:K, 7msz:K, 7mt2:K, 7mt3:K, 7mt7:K, 5o60:L, 5o61:L, 7s0s:M, 7sfr:K, 5v7q:K, 5v93:K, 8v9j:M, 8v9k:M, 8v9l:M, 8whx:N, 8why:N, 8wi7:N, 8wi8:N, 8wib:N, 8wic:N, 7xam:L, 5xym:K, 8xz3:L, 7y41:L, 5zeb:L, 5zep:L, 5zet:L
33 5wkf:I 198 53 0.1899 0.0758 0.2830 0.94 5wkh:D
34 5oj5:A 310 28 0.1392 0.0355 0.3929 1.1 5ojr:A, 5ojr:B
35 4lw9:A 119 69 0.2152 0.1429 0.2464 1.2 3fu1:A, 3fu1:B, 3gn9:A, 3gn9:B, 3gn9:C, 4lw9:B, 4lw9:C, 4lw9:D, 4lw9:E, 4lw9:F, 4lw9:I, 4lw9:J, 4lw9:K, 4lw9:L, 4lw9:Q, 4lw9:R
36 4xqk:A 1517 38 0.1646 0.0086 0.3421 1.7 4xqk:B
37 2x5d:D 380 44 0.2152 0.0447 0.3864 2.2 2x5d:A
38 4a7p:A 429 15 0.1266 0.0233 0.6667 4.1 4a7p:B
39 3cgh:A 507 16 0.0886 0.0138 0.4375 8.6 8uwv:A
40 2gie:A 257 32 0.1772 0.0545 0.4375 8.7 3e3y:A, 3e3y:B, 3e40:A, 3e40:B, 3e41:A, 3e41:B, 3e42:A, 3e42:B, 3e43:A, 3e43:B, 3e44:A, 3e44:B, 3e45:A, 3e45:B, 3ebc:A, 3ebc:B, 2gie:B, 2gie:C, 2gie:D, 2gig:A, 2gig:B, 2gih:A, 2gih:B, 2gii:A, 2gii:B, 2gij:A, 2gij:B, 1kc6:A, 1kc6:B, 1kc6:C, 1kc6:D, 1tw8:A, 1tw8:B, 1tw8:C, 1tw8:D, 1tx3:A, 1tx3:B, 1tx3:C, 1tx3:D, 1xhu:A, 1xhu:B, 1xhu:C, 1xhu:D, 1xhv:A, 1xhv:B, 1xhv:C, 1xhv:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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