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BioLiP
>protein
GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKH
KLEQLGGC

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5i50:B 96 86 0.8977 0.8229 0.9186 1.81e-49 5i50:A, 1nkp:A, 1nkp:D
2 5eyo:C 88 53 0.3295 0.3295 0.5472 1.00e-12 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
3 1hlo:A 80 49 0.3068 0.3375 0.5510 1.98e-11
4 5gnj:B 77 74 0.2955 0.3377 0.3514 7.12e-04 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
5 8osb:B 66 52 0.2500 0.3333 0.4231 0.001
6 7xi3:A 287 63 0.2045 0.0627 0.2857 0.003
7 1am9:C 82 67 0.2614 0.2805 0.3433 0.008 1am9:D, 1am9:A, 1am9:B
8 7xi4:A 283 60 0.1932 0.0601 0.2833 0.018 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
9 8ia3:E 111 86 0.3068 0.2432 0.3140 0.023 8ia3:A, 8ia3:B, 8ia3:F
10 1an4:A 65 56 0.2386 0.3231 0.3750 0.072 1an4:B
11 5nj8:D 134 77 0.2273 0.1493 0.2597 0.083
12 4zpr:A 235 59 0.2045 0.0766 0.3051 0.28
13 7d8t:A 199 59 0.2159 0.0955 0.3220 0.61 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
14 1mdy:A 68 65 0.2386 0.3088 0.3231 1.1 1mdy:B, 1mdy:C, 1mdy:D
15 4kpo:A 317 64 0.2045 0.0568 0.2812 1.1 4kpo:B, 6zk5:A, 6zk5:B
16 6zk3:A 319 64 0.2045 0.0564 0.2812 1.1 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
17 7z5i:A 56 53 0.1932 0.3036 0.3208 1.1 7z5i:B, 7z5k:A, 7z5k:B
18 2ics:A 368 42 0.1705 0.0408 0.3571 1.2
19 7xq5:A 75 58 0.1818 0.2133 0.2759 1.6
20 8k8c:A 60 24 0.1477 0.2167 0.5417 2.4 8k8c:B, 1nwq:A, 1nwq:C
21 1f3r:B 257 16 0.1364 0.0467 0.7500 2.8
22 7tom:A 498 37 0.1591 0.0281 0.3784 3.4 7tol:A
23 1a0a:A 63 58 0.2159 0.3016 0.3276 3.8 1a0a:B
24 6lcp:A 1140 32 0.1364 0.0105 0.3750 4.2 6lcr:A
25 2fmt:A 314 23 0.1250 0.0350 0.4783 5.1 2fmt:B
26 8ow1:B 116 73 0.2273 0.1724 0.2740 8.8 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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