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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GHMNTIKTVIISELEKNVDEFLNSYLEYLKYDDYDQYCTMIGLYDELTDQESISQIPTKYSIDPINFQKFTRVLTVAIYN
YDVNYILAEKYKELFEFTNMDPDFSPKYRFYSPIATCSYLSQYDLISESFQQDVTKLFDRMHKQQPGCMLMNQIMVSNLI
KNLLKNV

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c6v:D 167 167 1.0000 1.0000 1.0000 1.12e-122
2 6grd:A 407 75 0.1138 0.0467 0.2533 0.54 5cnq:A, 5co8:C, 5co8:A, 6grb:A, 6grc:A
3 7cmy:C 417 71 0.1198 0.0480 0.2817 1.4
4 3lqd:A 141 100 0.1497 0.1773 0.2500 4.7 3lqd:C, 2rao:A, 2rao:C
5 3son:A 147 71 0.1138 0.1293 0.2676 5.1 3son:B
6 3vre:A 141 52 0.0838 0.0993 0.2692 6.0 3vre:C, 3vrf:A, 3vrg:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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