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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GHMNSFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMY
DFANICSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWY
IYVGVPVRKIKARKRKIVELENEFLKSM

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vbm:E 193 188 0.9947 0.9689 0.9947 1.85e-135 3vbi:A, 3vbi:E, 3vbi:C, 3vbj:A, 3vbj:C, 3vbj:E, 3vbk:A, 3vbk:E, 3vbk:C, 3vbl:A, 3vbl:C, 3vbl:E, 3vbm:A, 3vbm:C, 3vbn:A, 3vbn:E, 3vbn:C, 3vbp:A, 3vbp:E, 3vbp:C
2 4mzu:F 294 132 0.2074 0.1327 0.2955 3.28e-08 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
3 8j40:A 209 58 0.0957 0.0861 0.3103 5.51e-05
4 3fsb:A 260 187 0.2553 0.1846 0.2567 9.32e-05 3fs8:A, 3fs8:B, 3fsb:B, 3fsc:A, 3fsc:B
5 3fsb:A 260 142 0.2181 0.1577 0.2887 1.0 3fs8:A, 3fs8:B, 3fsb:B, 3fsc:A, 3fsc:B
6 7s3u:A 145 126 0.1649 0.2138 0.2460 4.40e-04 7s3w:A, 7s41:A, 7s42:A, 7s43:A, 7s44:A, 7s45:A
7 3tio:F 177 140 0.1862 0.1977 0.2500 0.002 3tio:A, 3tio:B, 3tio:C, 3tio:D, 3tio:E, 3tis:A, 3tis:B, 3tis:C
8 3r3r:A 184 158 0.2074 0.2120 0.2468 0.002
9 1kru:A 201 117 0.1809 0.1692 0.2906 0.002 1kqa:A, 1kqa:B, 1kqa:C, 1krr:A, 1krr:B, 1krr:C, 1kru:B, 1kru:C, 1krv:A, 1krv:C, 1krv:B
10 5u2k:A 190 58 0.1117 0.1105 0.3621 0.004 5v0z:A, 5v0z:C, 5v0z:B, 3v4e:A, 3v4e:C, 3v4e:B
11 3vnp:A 171 110 0.1755 0.1930 0.3000 0.006 3vnp:B, 3vnp:C
12 2xat:A 208 58 0.0851 0.0769 0.2759 0.008
13 3mqg:C 192 164 0.1968 0.1927 0.2256 0.012 3mqg:A, 3mqg:B, 3mqg:D, 3mqg:E, 3mqg:F, 3mqh:A, 3mqh:C, 3mqh:B, 3mqh:D, 3mqh:F, 3mqh:E
14 4n27:A 175 150 0.2021 0.2171 0.2533 0.029 4n27:B, 4n27:C, 4n27:D, 4n27:E, 4n27:F
15 1khr:A 206 56 0.1064 0.0971 0.3571 0.030 3dho:A, 3dho:C, 3dho:B, 3dho:D, 3dho:F, 3dho:E, 1khr:B, 1khr:C, 1khr:D, 1khr:E, 1khr:F, 1kk4:A, 1kk4:B, 1kk4:C, 1kk4:D, 1kk4:E, 1kk4:F, 1mr9:A, 1mr9:C, 1mr9:B, 1mr9:X, 1mr9:Z, 1mr9:Y, 1mrl:A, 1mrl:B, 1mrl:C
16 4isx:A 186 47 0.1011 0.1022 0.4043 0.033 4isx:B
17 6pub:A 210 59 0.0904 0.0810 0.2881 0.044 6u9c:A, 6u9c:B, 6u9c:C
18 4n69:A 243 60 0.1277 0.0988 0.4000 0.057 4n69:B, 4n6b:A, 4n6b:E, 4n6b:B, 4n6b:C, 4n6b:D, 4n6b:F
19 3bss:A 194 54 0.0691 0.0670 0.2407 0.071 3bsy:A, 3bsy:C, 3bsy:B, 5t2y:A, 5t2y:B, 5tyh:A, 2vhe:A, 2vhe:B
20 3gvd:I 272 58 0.1117 0.0772 0.3621 0.076 3gvd:A, 3gvd:C, 3gvd:B, 3gvd:D, 3gvd:F, 3gvd:E, 3gvd:G, 3gvd:H, 3gvd:J, 3gvd:K, 3gvd:L
21 4h7o:A 258 47 0.0851 0.0620 0.3404 0.080 4h7o:C, 4h7o:B
22 2iu8:A 346 65 0.1011 0.0549 0.2923 0.13 2iu8:B, 2iu8:C, 2iu9:A, 2iu9:B, 2iu9:C, 2iua:A, 2iua:C
23 7uuk:C 276 53 0.1064 0.0725 0.3774 0.18 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B
24 1t3d:A 262 47 0.0851 0.0611 0.3404 0.22 7e3y:A, 7e3y:C, 7e3y:B, 8i04:A, 8i04:C, 8i04:B, 8i06:A, 8i06:B, 8i09:A, 8i09:B, 8i09:C, 8i09:D, 8i09:E, 8i09:F, 8i09:G, 8i09:H, 8i09:I, 8i09:J, 8i09:K, 8i09:L, 6jvu:A, 6jvu:C, 6jvu:B, 6jvu:D, 6jvu:F, 6jvu:E, 1t3d:B, 1t3d:C
25 6pxa:E 221 41 0.0691 0.0588 0.3171 0.29 6pxa:A, 6pxa:B, 6pxa:C, 6pxa:D, 6pxa:F, 6pxa:G, 6pxa:H, 6pxa:I, 6pxa:J, 6pxa:K, 6pxa:L, 5ux9:A, 5ux9:B, 5ux9:C, 5ux9:D
26 4eaa:A 210 55 0.1011 0.0905 0.3455 0.80 4ea7:A, 4ea8:A, 4ea9:A, 4eab:A
27 4hus:A 212 56 0.0904 0.0802 0.3036 0.88 4hur:A, 4hur:B, 4hur:C, 4hus:C, 6x3c:A, 6x3c:F, 6x3c:B, 6x3c:C, 6x3c:D, 6x3c:E, 6x3j:A, 6x3j:B, 6x3j:D, 6x3j:C, 6x3j:E, 6x3j:F
28 2fko:A 173 64 0.1117 0.1214 0.3281 0.88 1v3w:A, 1v67:A
29 6wye:A 261 51 0.1011 0.0728 0.3725 0.92 7ra4:A, 7ra4:C, 7ra4:B, 6wye:C, 6wye:B, 6wye:D, 6wye:F, 6wye:E
30 1ssq:D 257 53 0.0851 0.0623 0.3019 1.0 1ssq:A, 1sst:A, 1sst:B, 1sst:C
31 3r8y:A 203 55 0.1011 0.0936 0.3455 1.3 3r8y:C, 3r8y:D, 3r8y:F
32 8bef:x 210 89 0.1277 0.1143 0.2697 1.4 8bpx:x, 8bq5:x, 8bq6:x
33 3foq:A 439 75 0.1117 0.0478 0.2800 2.1
34 7okc:A 264 68 0.1117 0.0795 0.3088 3.1 2aq9:A, 6hy2:X, 4j09:A, 2jf3:A, 6p9p:A, 6p9q:A, 6p9r:A, 6p9s:A, 6p9t:A, 2qia:A, 2qiv:X
35 6ive:A 168 71 0.0904 0.1012 0.2394 3.7 6ive:B, 6ive:C, 6ive:D, 6ive:E, 6ive:F
36 8e62:C 183 72 0.1011 0.1038 0.2639 4.3 8e62:A, 8e62:B, 8e62:D, 8e62:E, 8e62:F
37 3d8v:A 478 61 0.0957 0.0377 0.2951 4.5 3dj4:A, 4g3p:A, 4g3q:A, 4g3s:A, 4g87:A, 6ge9:A, 4hcq:A, 4k6r:A, 2qkx:A, 3spt:A, 3st8:A
38 6sc4:B 178 64 0.1064 0.1124 0.3125 5.4 6sc4:A, 6sc4:C, 6sc4:D, 6sc4:E
39 8dvs:A 682 75 0.1170 0.0323 0.2933 5.9 7bah:A, 7bah:B, 7bai:A, 7bai:B, 7bai:E, 8dvu:A, 5f9f:A, 5f9f:C, 5f9f:E, 5f9f:G, 5f9f:I, 5f9f:K, 7jl1:A, 6kyv:B, 6kyv:D, 6kyv:F, 6kyv:H, 6kyv:J, 6kyv:L, 3lrn:A, 3lrn:B, 3lrr:A, 3lrr:B, 7mk1:A, 7mk1:B, 3ncu:A, 3ncu:B, 3og8:A, 3og8:B, 2qfb:A, 2qfb:B, 2qfb:C, 2qfb:D, 2qfb:E, 2qfb:F, 2qfb:G, 2qfb:H, 2qfb:I, 2qfb:J, 7tny:A, 7tnz:A, 7to0:A, 7to2:A
40 8gpm:A 193 30 0.0691 0.0674 0.4333 5.9 8gpp:A, 8gpp:B, 8gpp:C
41 4hzd:A 250 49 0.0851 0.0640 0.3265 7.0 4hzc:F, 4hzc:J
42 7d72:A 407 117 0.1543 0.0713 0.2479 8.0 7d72:B, 7d72:C, 7d72:D, 7d73:A, 7d73:B, 7d73:C, 7d73:D, 7d74:A, 7d74:D, 7d74:B, 7d74:C
43 5lzl:A 336 35 0.0638 0.0357 0.3429 8.2 5lzl:B, 5lzl:D, 5lzl:E, 5lzl:F, 5lzl:G, 5lzl:I, 5lzl:J, 5lzl:K, 5lzl:L
44 7ojp:Z 261 54 0.0691 0.0498 0.2407 8.9 5dep:A, 5dep:B, 5dep:D, 5dep:E, 5dep:F, 5dg3:A, 5dg3:B, 5dg3:C, 5dg3:D, 5dg3:E, 7oj6:A, 7oj6:B, 7oj6:C, 7ojp:A, 7ojp:B, 7ojp:C, 7ojp:D, 7ojp:E, 7ojp:F, 7ojp:G, 7ojp:H, 7ojp:I, 7ojp:J, 7ojp:K, 7ojp:L, 7ojp:M, 7ojp:N, 7ojp:O, 7ojp:P, 7ojp:Q, 7ojp:R, 7ojp:S, 7ojp:T, 7ojp:U, 7ojp:V, 7ojp:W, 7ojp:X, 7ojp:Y, 7ojp:a, 7ojp:b, 7ojp:c, 7ojp:d, 7ojq:A, 7ojq:B, 7ojq:C, 7ojw:A, 7ojw:B, 7ojw:C, 7ojy:A, 7ojy:B, 7ojy:C, 7ok1:A, 7ok1:B, 7ok1:C, 7ok2:1, 7ok2:Y, 7ok2:Z, 7ok2:2, 7ok2:4, 7ok2:3, 7ok2:A, 7ok2:B, 7ok2:C, 7ok2:D, 7ok2:E, 7ok2:F, 7ok2:G, 7ok2:I, 7ok2:H, 7ok2:J, 7ok2:L, 7ok2:K, 7ok2:M, 7ok2:N, 7ok2:O, 7ok2:P, 7ok2:Q, 7ok2:R, 7ok2:S, 7ok2:T, 7ok2:U, 7ok2:V, 7ok2:X, 7ok2:W, 7oka:A, 7oka:C, 7oka:B, 7oka:D, 7oka:E, 7oka:F, 7oka:G, 7oka:H, 7oka:I, 7oka:M, 7oka:N, 7oka:O, 7oka:J, 7oka:K, 7oka:L, 7oka:P, 7oka:Q, 7oka:R, 7oka:S, 7oka:T, 7oka:U, 7oka:V, 7oka:W, 7oka:X, 7oka:Y, 7oka:Z, 7oka:a, 7oka:b, 7oka:d, 7oka:c, 7okb:A, 7okb:B, 7okb:C, 7okb:D, 7okb:E, 7okb:F, 7okb:G, 7okb:H, 7okb:I, 7okb:M, 7okb:N, 7okb:O, 7okb:J, 7okb:K, 7okb:L, 7okb:P, 7okb:Q, 7okb:R, 7okb:S, 7okb:T, 7okb:U, 7okb:V, 7okb:W, 7okb:X, 7okb:Y, 7okb:Z, 7okb:a, 7okb:b, 7okb:c, 7okb:d, 7t5r:A, 7t5r:B, 7t5r:C, 7t5r:D, 7t5r:F, 7t5r:E, 7t5s:A, 7t5s:B, 7t5s:C, 7t5s:D, 7t5s:F, 7t5s:E, 7t5x:A, 7t5x:B, 7t5x:C, 7t5x:D, 7t5x:F, 7t5x:E, 7t5z:A, 7t5z:B, 7t5z:C, 7t5z:D, 7t5z:E, 7t5z:F, 7t60:A, 7t60:B, 7t60:C, 7t60:D, 7t60:F, 7t60:E, 7t61:A, 7t61:B, 7t61:C, 7t61:D, 7t61:E, 7t61:F, 6uee:A, 6uee:C, 6uee:B, 6uee:D, 6uee:E, 6uee:F, 6ueg:A, 6ueg:C, 6ueg:B, 6ueg:D, 6ueg:E, 6ueg:F
45 3dkx:A 202 57 0.0745 0.0693 0.2456 9.0 8amt:AAA, 8amu:A, 8amu:B, 8amu:E, 8amu:F, 3dkx:B, 3dkx:C, 3dky:A, 3dky:B, 3dky:C, 3dky:F, 4u87:A, 4u87:B, 4u87:C
46 8bd3:Y 221 31 0.0585 0.0498 0.3548 9.6 8bd3:y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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