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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GHMNDALHIGLPPFLVQANNEPRVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHA
EILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARG
ITVTTGLLRDAACALLREYNAC

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2g84:A 189 180 0.9890 0.9524 1.0000 2.11e-129 7c3s:A, 7c3s:B, 7c3t:A, 7c3t:B, 7c3u:A, 7c3u:B, 2g84:B, 4hrq:A, 4hrq:B, 4hrw:A, 4hrw:B, 4lc5:A, 4lc5:B, 4lcn:A, 4lcn:B, 4lco:A, 4lco:B, 4lcp:A, 4lcp:B, 4ld2:A, 4ld2:B, 4ld4:A, 4ld4:B
2 7dc9:D 161 100 0.2088 0.2360 0.3800 1.82e-13 7dbf:A, 7dbf:D, 7dc9:A, 7dca:A, 7dca:D, 7dcb:A, 7dcb:D, 7dcw:A, 7dcw:D, 7dgc:A, 7dgc:D, 7dh1:A, 7dh1:D, 7dlc:A, 7dlc:D, 7dm5:A, 7dm5:D, 7dm6:A, 7dm6:D, 7dow:A, 7dow:D, 7dox:A, 7dox:D, 7doy:A, 7doy:D, 7dpk:A, 7dpk:D, 7dqn:A, 7dqn:D, 5jfy:A, 5jfy:B, 5jfy:C, 5jfy:D, 7w1q:A, 7w1q:D
3 1wkq:A 158 100 0.2033 0.2342 0.3700 1.28e-12 1tiy:A, 1tiy:B, 1wkq:B
4 1wwr:C 160 76 0.1374 0.1562 0.3289 2.98e-06 1wwr:A, 1wwr:B, 1wwr:D
5 1z3a:A 156 120 0.2143 0.2500 0.3250 3.49e-06 3ocq:A, 1z3a:B
6 8e2q:B 160 117 0.2143 0.2437 0.3333 1.24e-05 8e2p:A, 8e2p:B, 8e2p:C, 8e2p:D, 8e2q:A, 8e2q:C, 8e2q:D, 8e2r:A, 8e2r:B, 8e2s:A, 8e2s:B, 8e2s:C, 8e2s:D, 8e2s:E, 8e2s:F, 8e2s:G, 8e2s:H, 6vpc:F
7 6l2m:A 144 81 0.1099 0.1389 0.2469 2.30e-04 6l2l:A
8 2a8n:B 138 75 0.1319 0.1739 0.3200 0.001 2a8n:A
9 7bv5:A 234 92 0.1319 0.1026 0.2609 0.002 7bv5:B
10 7cph:B 156 75 0.1484 0.1731 0.3600 0.013 7cph:A
11 2b3j:C 152 85 0.1538 0.1842 0.3294 0.030 2b3j:A, 2b3j:B, 2b3j:D
12 8wlv:A 158 100 0.1538 0.1772 0.2800 0.15 8wlv:B, 8wlv:C, 8wlv:D, 8wlw:A, 8wlw:C, 8wlw:B, 8wlw:D, 8wlx:A, 8wlx:B, 5xko:A, 5xko:B, 5xkp:A, 5xkp:B, 5xkp:C, 5xkp:D, 5xkq:A, 5xkq:B, 5xkq:C, 5xkq:D, 5xkr:A, 5xkr:B, 5xkr:C, 5xkr:D
13 8i3p:B 166 103 0.1429 0.1566 0.2524 0.22 8i3n:A, 8i3n:B, 8i3n:C, 8i3n:D, 8i3o:A, 8i3o:B, 8i3o:C, 8i3o:D, 8i3p:A, 2o3k:A, 2o3k:B, 1ox7:A, 1ox7:B, 1p6o:A, 1p6o:B, 1rb7:A, 1rb7:B, 1uaq:A, 1uaq:B, 8vlj:A, 8vlj:B, 8vlk:A, 8vlk:B, 8vlk:C, 8vlk:D, 8vll:A, 8vll:B, 8vlm:A, 8vlm:B, 8vlm:C, 8vlm:D, 1ysb:A, 1ysb:B, 1ysd:A, 1ysd:B
14 2nx8:A 168 62 0.1209 0.1310 0.3548 0.44
15 7fh4:A 140 45 0.0714 0.0929 0.2889 1.1 7fh4:B, 7fh9:A
16 8aw3:2 177 69 0.1044 0.1073 0.2754 1.2
17 7aju:CE 436 49 0.0879 0.0367 0.3265 4.6 7ajt:CE, 7d4i:3E, 7d5s:3E, 7d5t:3E, 7d63:3E, 6ke6:3E, 6lqp:3E, 6lqq:3E, 6lqr:3E, 6lqs:3E, 6lqt:3E, 6lqu:3E, 6lqv:3E, 7suk:SB, 5wyj:3E, 5wyk:3E, 6zqa:CE, 6zqb:CE, 6zqc:CE, 6zqd:CE, 6zqe:CE
18 6nd4:b 425 49 0.0879 0.0376 0.3265 5.3 5wlc:SB
19 7nz7:A 166 61 0.0879 0.0964 0.2623 5.9 3dh1:A, 3dh1:B, 3dh1:C, 3dh1:D, 7nz8:A, 7nz9:A
20 4fju:A 338 60 0.1044 0.0562 0.3167 5.9 4fju:B, 4h8a:A, 4h8a:B
21 7nz8:B 284 67 0.0989 0.0634 0.2687 7.1 7nz7:B, 7nz9:B
22 7ziu:B 606 54 0.1044 0.0314 0.3519 7.7 7ziu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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