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BioLiP
>protein
GHMKLCTFTITQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j9q:A 73 73 1.0000 1.0000 1.0000 7.03e-50 8j9q:B, 8j9q:C, 8j9r:A
2 8p82:A 1596 59 0.3151 0.0144 0.3898 1.54e-11 8p82:B
3 8bja:B 1638 59 0.3151 0.0140 0.3898 1.55e-11
4 8d4x:B 1669 59 0.3151 0.0138 0.3898 1.55e-11 8c06:A, 8c06:D
5 8e0q:A 1689 59 0.3151 0.0136 0.3898 1.55e-11 8d4x:A, 8e0q:B
6 8ewi:A 1775 59 0.3151 0.0130 0.3898 1.55e-11 8ewi:B, 8ewi:C, 8ewi:D
7 8bja:A 1563 59 0.3151 0.0147 0.3898 1.91e-11
8 7yrb:A 83 58 0.3014 0.2651 0.3793 5.65e-10 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
9 7mex:A 1737 48 0.2055 0.0086 0.3125 0.49 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
10 8btd:SC 210 54 0.1918 0.0667 0.2593 0.52 8br8:SC, 8brm:SC, 8bsi:SC, 8bsj:SC, 8btr:SC, 8fvy:D, 8g4s:D, 7pwf:D, 7pwo:D1
11 7wul:A 70 47 0.2329 0.2429 0.3617 0.53 7wuk:A, 7wum:A, 7wun:A
12 1x6h:A 86 36 0.1507 0.1279 0.3056 1.6
13 4ylf:A 276 36 0.1918 0.0507 0.3889 2.1 4ylf:C, 4yry:A, 4yry:C
14 7q8e:A 397 31 0.1370 0.0252 0.3226 2.4 6gs2:B, 6gs2:D, 6h5e:B, 6h5e:D, 7q8e:C
15 7owj:F 197 35 0.1644 0.0609 0.3429 2.6 7owe:E, 7owe:F, 7owe:D, 7owe:A, 7owe:B, 7owe:C, 7owj:A, 7owj:B, 7owj:C, 7owj:D, 7owj:E, 7owk:B, 7owk:A, 7owk:C, 7owk:D, 7owk:E, 7owk:F, 7owl:A, 7owl:B, 7owl:C, 7owl:D, 7owl:E, 7owl:F
16 7w1m:H 322 36 0.1507 0.0342 0.3056 4.5 5k5h:A, 5k5i:A, 5k5j:A, 5k5l:E, 5k5l:G, 5k5l:F, 5kkq:A, 5kkq:D, 8ssq:A, 8ssq:D, 8ssr:A, 8ssr:D, 8sss:A, 8sss:D, 8sst:A, 8sst:D, 8ssu:A, 5t00:A, 5t00:D, 5t0u:A, 5t0u:D, 5und:A, 5und:B, 5yef:A, 5yef:B, 5yef:G, 5yef:J, 5yeg:A, 5yeg:B, 5yeh:A, 5yeh:B, 5yel:B, 5yel:A
17 7y70:A 77 53 0.2466 0.2338 0.3396 5.9 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
18 7wj9:A 733 41 0.1918 0.0191 0.3415 8.3 7wj9:B, 7wj9:C, 7wj9:D, 7wj9:F, 7wj9:E, 7wjb:A, 7wjc:A, 7wjd:A, 7wje:A, 7wjf:A
19 5y0n:A 401 29 0.1370 0.0249 0.3448 9.7 5y0n:B, 5y0p:A, 5y0p:B, 5y0q:A, 5y0q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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