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BioLiP
>protein
GHMGAQWNCTACTFLNHPALIRCEQCEMPRHF

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a9j:C 32 32 1.0000 1.0000 1.0000 1.18e-19 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
2 1nj3:A 31 30 0.4375 0.4516 0.4667 4.27e-05 1q5w:A
3 7mnr:B 40 27 0.3125 0.2500 0.3704 0.006
4 7mo2:B 38 24 0.2812 0.2368 0.3750 0.009 3ch5:B, 7mo2:D
5 2ebq:A 47 24 0.3125 0.2128 0.4167 0.010 2gqe:A, 2k0c:A
6 2crc:A 52 20 0.3125 0.1923 0.5000 0.027
7 8im5:A 66 20 0.3125 0.1515 0.5000 0.029 3b0a:E
8 8pp6:K 36 24 0.2500 0.2222 0.3333 0.091
9 7mns:B 38 25 0.2812 0.2368 0.3600 0.15
10 2d9g:A 53 22 0.2500 0.1509 0.3636 0.16
11 7yui:B 232 20 0.3125 0.0431 0.5000 0.20 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
12 7mnt:B 38 25 0.2500 0.2105 0.3200 0.26 7mnt:D, 7mnu:B
13 7mnv:B 38 26 0.2188 0.1842 0.2692 0.29
14 7mnp:B 39 21 0.2500 0.2051 0.3810 0.52 7mnp:D, 7mnq:B
15 1gax:A 862 37 0.4062 0.0151 0.3514 0.52 1gax:B, 1ivs:A, 1ivs:B, 1wk9:A
16 2k1p:A 33 31 0.2500 0.2424 0.2581 1.2
17 2c6a:A 46 24 0.2500 0.1739 0.3333 3.2 2c6b:A, 4xxb:B
18 9b4h:A 1908 19 0.2500 0.0042 0.4211 4.2 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
19 6z2w:E 2325 18 0.3125 0.0043 0.5556 5.2 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
20 2cr8:A 53 21 0.2500 0.1509 0.3810 6.5
21 7z0s:E 532 15 0.2188 0.0132 0.4667 7.3 7z0t:E
22 2b7r:A 568 25 0.1875 0.0106 0.2400 7.7 2b7s:A, 1e39:A, 1jrx:A, 1jrx:B, 1jry:A, 1jry:B, 1jrz:A, 1jrz:B, 1kss:A, 1ksu:A, 1ksu:B, 1lj1:A, 1lj1:B, 1m64:A, 1m64:B, 1p2e:A, 1p2h:A, 1q9i:A, 1qjd:A, 1y0p:A
23 7r7j:B 574 20 0.2500 0.0139 0.4000 8.0 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
24 2fiy:A 285 25 0.2500 0.0281 0.3200 8.8 2fiy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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